Disconnected from server

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aditya pawar

Jun 1, 2020, 11:40:26 AM6/1/20
to Omics Playground

I tried to build .pgx data file for GSE128781 and GSE128854 for bulk seq and single-cell seq respectively, using the codes from scripts folder. I was able to build the .pgx file but when I am uploading it on (http://covid19.bigomics.ch/app/omicsplayground_virome) the webapp somehow after selecting compute its getting disconnected from server. 

Some guidance will be appreciated. Thank you.


Ivo Kwee

Jun 17, 2020, 7:36:56 AM6/17/20
to Omics Playground
Hi Aditya.

Sometimes it is due to a slow internet connection. In this case you may try to download the docker and run the server locally. This much faster.  Sometimes it is an error in the input files or pgx. If you run the Omics Playground from source or from local docker, you may look in the log files in ~/ShinyApps/log and follow the errors in the output log. Can you perhaps share your PGX files and scripts so I can try reproduce the error? 


Ivo Kwee

Jun 23, 2020, 5:54:23 AM6/23/20
to Omics Playground
hi Aditya. We adjusted some parameters on the server. Can you try again and see if it is better?

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