Hi Luis,
Without wanting to take anything away from the awesomeness of
omeka, and depending on how big your virtual herbarium is, you
might want to take a look at The Atlas of Living Australia (which,
despite its name, is also the Atlas of Living Scotland, Atlas of
Living France, Atlas of Living Brazil etc.)
https://github.com/AtlasOfLivingAustralia
https://github.com/AtlasOfLivingAustralia/ala-install provides playbooks for setting up a demo version up in a virtual machine that you can play with.
It's a lot more heavyweight than omeka and will require quite a lot of effort to get it into the shape you want*. However, it's very powerful and scalable, is designed to work with taxonomies and uses Darwin Core as a native structure.
I happen to be the ALA name-wrangler so feel free to contact me
if you want more information.
Doug Palmer
* For example, you'll need to feed it your taxonomy in Darwin
Core Archive form before it can start classifying your records.
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