OmegaPlus -length argument using VCF file as input.

[Willian Silva]

I am using OmegaPlus with a VCF file. How do I get the value of the -length argument? Also, is there a more objective way of setting the values of the -minwin and -maxwin? Right now, this is the code I have with (kind of) random values of length, minwin and maxwin.

OmegaPlus \
-name ${outputfilesuffix} \
-input ${inputfile} \
-ld RSQUARE \
-grid ${nsites} \
-length 200000 \
-minwin 1000 \
-maxwin 100000 \
-seed 15243

I appreciate any help.

Cheers,

Will