OmegaPlus

Dear Pavlos, Has this bug been fixed? Gabriele On Friday, September 18, 2020 at 12:17:45 PM UTC+2

Hi Pavlos, Thank you very much for developing SweeD. I am running SweeD on individual chromosome with

Hello Masha, I checked your file and there are monomorphic columns. RAiSD assumes that ms files do

Thank you very much for your last reply. I used the VCF - Validator and got the following results. I

Hello, I am using vcf files to run SweeD on whole genome data. My vcf file contains * at some places

Hi Nikos, Thanks a lot for your help! I can confirm that using the -strictPolymorphic option for both

This assertion suggests that there is something wrong with the input file rather than SweeD. More

Changing the grid size should not be affecting the results. It's mostly a matter of how you

You can find a response to this question here: https://github.com/alachins/raisd/issues/23 On Tuesday

Hi, thanks for sharing your tools and this discussion platform I'm studying the evolution of

Hello Group, Am trying to run SweeD for my Rice Data of 226 Genotypes. may be my commands are wrong,

What I am trying to say is that we do not have access to those scripts on those servers anymore. Part

Hi Brian, The following three conditions must be satisfied for a VCF line to not be straight away

Hi Nikos Now works !!! thanks for your help Jaime El mié., 14 de ago. de 2019 a la(s) 11:14, Nikolaos

Hi Kai, When you say that "the start position and end position is different", do you refer

Hi, Have you used the latest version of RAiSD? if not, to correct the problem for the small scaffolds

Dear Boris, this is not a very easy problem. I think that you should use one of the following

Hi, it is not so important. You can follow any method you like. However, it is important for the

Yes it does. You need to include the -all command-line flag. On Fri, Mar 22, 2019 at 2:37 PM <

Hi Kai, Just put a random number there... whatever, eg 193834. It is needed just in case you have

Hi, is it possible to add items to the glossary, inside OmegaT+ and if so how to do it ? Thank you,

Thank you Dr. Vineeth MR Ph.D Scholar Molecular Genetics Lab ICAR-NDRI Karnal, Haryana 132001 On Mon,

Dear Dr. Pavlidis, Thank you very much for your response. This information is very helpful. I do have

Thanks for the reply. After 100 mins, SweeD successfully finished the analysis. 在 2018年10月11日星期四 UTC+

Here is an example: if you first SNP is at position 1 and your last is at position 1000, and you give

Hi Rilquer, I fixed that in version 2.2.11. You can get the latest release here: https://github.com/

Hi Joe, There is no way to use monomorphic sites with OmegaPlus. OmegaPlus implements the omega

Hi Anna, The error you are getting is due to the fact that the grid size you chose is larger than the

... I meant "since we developed SweeD"... sorry On Thu, Nov 10, 2016 at 1:02 AM, Pavlos

Dear Li, please correct me if I'm wrong: You have several reads that can be assembled into