Path/module problem (?) causing 'decompose' to quit

[Hilary Morrison]

morrison@jake: tail RUNINFO.log

The "ward" method has been renamed to "ward.D"; note new "ward.D2"

The "ward" method has been renamed to "ward.D"; note new "ward.D2"

[1] "PDF: '/automounts/workspace/workspace/morrison/portuguese_paper/00_357_samples-m0.10-A0-M10-d4/FIGURES/species/heatmap_analysis/horn.pdf'"

null device

          1

The "ward" method has been renamed to "ward.D"; note new "ward.D2"

Execution halted

-bash: o-heatmap.R: command not found

-bash: o-heatmap.R: command not found

had been running in screen session. 

So, the bulk of the analysis has been done; is there an easy way to get it to start at the figure generation step? I don't know how to run the standalone scripts using the metadata.

The long term solution is 'learn R', I know.

[A. Murat Eren]

Hi Hilary,

I don't know why heatmap.R is not in the path. It should be in a proper installation. If you look at the help menu of that script once you locate it, you will see it is pretty easy to use it as a standalone script with your metadata file :)

--

A. Murat Eren (Meren)
http://merenlab.org :: twitter :: gpg

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