OGRDB Discussion

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William

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Andrew Collins, William Lees2

1/27/20

Non-IMGT sequence downloads

Hi Andrew, Yes you're right in thinking that the IMGT name isnused at the moment. I'll change

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Non-IMGT sequence downloads

Hi Andrew, Yes you're right in thinking that the IMGT name isnused at the moment. I'll change

1/27/20

William Lees

10/31/19

OGRDB Updated

This is an occasional mail summarising key changes to OGRDB: - OGRDB is now accepting V- and J-

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OGRDB Updated

This is an occasional mail summarising key changes to OGRDB: - OGRDB is now accepting V- and J-

10/31/19

wil...@lees.org.uk

4/29/19

OGRDB Updated

The Inferred Sequence display has been revised: - 'Details' and 'Evidence' tabs

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OGRDB Updated

The Inferred Sequence display has been revised: - 'Details' and 'Evidence' tabs

4/29/19

Andrew Collins, William Lees2

4/9/19

Downloading affirmed sequecnes

Hi Andrew, Good idea. Will build this in. Thanks William On 09/04/2019 03:11, Andrew Collins wrote:

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Downloading affirmed sequecnes

Hi Andrew, Good idea. Will build this in. Thanks William On 09/04/2019 03:11, Andrew Collins wrote:

4/9/19

wil...@lees.org.uk

3/31/19

OGRDB Updated

New fields have been added to the genotype: - counts of D-calls, J-calls and unique CDR3s in

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OGRDB Updated

New fields have been added to the genotype: - counts of D-calls, J-calls and unique CDR3s in

3/31/19

William Lees, … Andrew Collins6

3/31/19

Genotype statistics - counts of unique CDR3s, J and D calls

Chaim, We decided that there was value in having both the mutated and unmutated counts in the

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Genotype statistics - counts of unique CDR3s, J and D calls

Chaim, We decided that there was value in having both the mutated and unmutated counts in the

3/31/19

Andrew Collins, William Lees3

3/24/19

SRA/ENA acession numbers

Of course. Thanks William, I should have been able to find that myself! I don't think you should

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SRA/ENA acession numbers

Of course. Thanks William, I should have been able to find that myself! I don't think you should

3/24/19

Andrew Collins, William Lees2

3/15/19

Nt diff

Thanks Andrew. I'll add fields for nt and aa differences to the closest reference in host.

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Nt diff

Thanks Andrew. I'll add fields for nt and aa differences to the closest reference in host.

3/15/19

wil...@lees.org.uk

2/27/19

OGRDB Updated

OGRDB has been updated today. The main change is support for multiple attachments, both to

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OGRDB Updated

OGRDB has been updated today. The main change is support for multiple attachments, both to

2/27/19

Andrew Collins, wil...@lees.org.uk2

2/27/19

Cross-referencing submission numbers

Hi Andrew, I think I replied to you about this, but as the reply didn't make the list for some

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Cross-referencing submission numbers

Hi Andrew, I think I replied to you about this, but as the reply didn't make the list for some

2/27/19

wil...@lees.org.uk, Andrew Collins3

2/11/19

OGRDB - Creating the Genotype File

It doesn't at the moment, but I will add it, both to the script and to the displayed genotype. On

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OGRDB - Creating the Genotype File

It doesn't at the moment, but I will add it, both to the script and to the displayed genotype. On

2/11/19

wil...@lees.org.uk

1/27/19

OGRDB Updates

The following updates have been made to OGRDB. Please let me know if you have questions or encounter

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OGRDB Updates

The following updates have been made to OGRDB. Please let me know if you have questions or encounter

1/27/19

wil...@lees.org.uk

12/5/18

OGRDB fields updated

A few fields have been updated in OGRDB following manuscript review: In the Gene Description, '

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OGRDB fields updated

A few fields have been updated in OGRDB following manuscript review: In the Gene Description, '

12/5/18

Chaim Schramm, … Andrew Collins4

12/3/18

select sets

Hi Chaim, I am preparing for Friday's IARC meeting, and I wonder how things are going with your

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select sets

Hi Chaim, I am preparing for Friday's IARC meeting, and I wonder how things are going with your

12/3/18

wil...@lees.org.uk

11/16/18

OGRDB live at permanent address

The 'production' version of OGRDB is now running at https://ogrdb.airr-community.org and is

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OGRDB live at permanent address

The 'production' version of OGRDB is now running at https://ogrdb.airr-community.org and is

11/16/18

William Lees2

11/8/18

Ogrdb upgraded

Dear All, The code has been updated as follows: Functionality - FASTA sequences are now displayed

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Ogrdb upgraded

Dear All, The code has been updated as follows: Functionality - FASTA sequences are now displayed

11/8/18

wil...@lees.org.uk

10/19/18

Minor Update

Thanks to everyone who has reviewed the site, and especially those who have reported problems or made

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Minor Update

Thanks to everyone who has reviewed the site, and especially those who have reported problems or made

10/19/18

mats....@immun.lth.se, William Lees2

10/12/18

Minor suggestions

Thanks very much for these, Mats. Will work on some updates. In case you're interested, I'm

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Minor suggestions

Thanks very much for these, Mats. Will work on some updates. In case you're interested, I'm

10/12/18

Andrew Collins, wil...@lees.org.uk2

10/6/18

Submission details

Thanks Andrew - good point. Another thing that's been at the back of my mind for some time is

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Submission details

Thanks Andrew - good point. Another thing that's been at the back of my mind for some time is

10/6/18