OGMS release 2020-07-06

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Aevermann, Brian

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Aug 4, 2020, 2:20:31 PM8/4/20

to ogms-d...@googlegroups.com, Scheuermann, Richard, wddu...@gmail.com, phis...@buffalo.edu, mpj...@gmail.com, zheng...@gmail.com, hog...@gmail.com, jansen....@gmail.com, Randi Vita, ifo...@gmail.com, mres...@buffalo.edu, Bost,Sarah

Hello all,

I have released the new version of OGMS on github. Along with the new terms and updates, I have hopefully addressed a number of technical problems. However, at the moment it is not displaying correctly at Bioportal. The owl file that can be downloaded there is correct, but the actually visualization is out of date. I have had problems with bioportal in the past, and sometimes it just takes time for it to correct itself. I will monitor the situation. Otherwise, let me know if there are other issues related to the release.

Thanks!

Brian Aevermann

—

Brian Aevermann

Bioinformatics Analyst

J. Craig Venter Institute

4120 Capricorn Lane

La Jolla, CA 92037

858-200-1873

From: <ogms-d...@googlegroups.com> on behalf of "Aevermann, Brian" <baev...@jcvi.org>
Reply-To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>
Date: Tuesday, July 14, 2020 at 11:55 AM
To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>, "Scheuermann, Richard" <RScheu...@jcvi.org>, "wddu...@gmail.com" <wddu...@gmail.com>, "phis...@buffalo.edu" <phis...@buffalo.edu>, "mpj...@gmail.com" <mpj...@gmail.com>, "zheng...@gmail.com" <zheng...@gmail.com>, "hog...@gmail.com" <hog...@gmail.com>, "jansen....@gmail.com" <jansen....@gmail.com>, Randi Vita <rv...@lji.org>, "ifo...@gmail.com" <ifo...@gmail.com>, Barry Smith <ifo...@gmail.com>, "mres...@buffalo.edu" <mres...@buffalo.edu>, "Bost,Sarah" <sarah...@ufl.edu>
Subject: OGMS call July 15th 2020

Hello all,

We will be having an OGMS development call tomorrow. It will be a focused call, covering the OGMS release detailed in the agenda/notes document in the google drive. Richard is on vacation so he will not be attending.

Thanks,

Brian Aevermann

—

Brian Aevermann

Bioinformatics Analyst

J. Craig Venter Institute

4120 Capricorn Lane

La Jolla, CA 92037

858-200-1873

From: <ogms-d...@googlegroups.com> on behalf of "Aevermann, Brian" <baev...@jcvi.org>
Reply-To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>
Date: Wednesday, June 17, 2020 at 2:24 PM
To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>, "Scheuermann, Richard" <RScheu...@jcvi.org>, "wddu...@gmail.com" <wddu...@gmail.com>, "phis...@buffalo.edu" <phis...@buffalo.edu>, "mpj...@gmail.com" <mpj...@gmail.com>, "zheng...@gmail.com" <zheng...@gmail.com>, "hog...@gmail.com" <hog...@gmail.com>, "jansen....@gmail.com" <jansen....@gmail.com>, Randi Vita <rv...@lji.org>, "ifo...@gmail.com" <ifo...@gmail.com>, Barry Smith <ifo...@gmail.com>, "mres...@buffalo.edu" <mres...@buffalo.edu>
Subject: Re: OGMS call June 17th

Hello all,

The recording on the presentation is now available in the google drive. Its called “OGMS-IDO_COVID_presentation.mp4”.

Thanks,

Brian Aeverman

—

Brian Aevermann

Bioinformatics Analyst

J. Craig Venter Institute

4120 Capricorn Lane

La Jolla, CA 92037

858-200-1873

From: <ogms-d...@googlegroups.com> on behalf of "Aevermann, Brian" <baev...@jcvi.org>
Reply-To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>
Date: Tuesday, June 16, 2020 at 11:12 AM
To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>, "Scheuermann, Richard" <RScheu...@jcvi.org>, "wddu...@gmail.com" <wddu...@gmail.com>, "phis...@buffalo.edu" <phis...@buffalo.edu>, "mpj...@gmail.com" <mpj...@gmail.com>, "zheng...@gmail.com" <zheng...@gmail.com>, "hog...@gmail.com" <hog...@gmail.com>, "jansen....@gmail.com" <jansen....@gmail.com>, Randi Vita <rv...@lji.org>, "ifo...@gmail.com" <ifo...@gmail.com>, Barry Smith <ifo...@gmail.com>, "mres...@buffalo.edu" <mres...@buffalo.edu>
Subject: OGMS call June 17th

Hello all,

We will be having an OGMS call tomorrow at 11 am PDT. The abbreviated agenda is:

OGMS release
IDO-COVID-19 ontology presentation

We will be recording this presentation, so if you don’t want your attendance recorded, please change your Webex name to something anonymous

New term requests / issue tracker

Detailed agenda available at:

https://docs.google.com/document/d/1_gNPXjC2-pr5wvrmO1iVd2Cp9rzqf0qQG2L4UUJwBIs/edit#heading=h.igpx7cq8hvyl

Thanks!

Brian Aevermann

—

Brian Aevermann

Bioinformatics Analyst

J. Craig Venter Institute

4120 Capricorn Lane

La Jolla, CA 92037

858-200-1873

From: <ogms-d...@googlegroups.com> on behalf of "Aevermann, Brian" <baev...@jcvi.org>
Reply-To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>
Date: Wednesday, May 20, 2020 at 8:19 AM
To: "ogms-d...@googlegroups.com" <ogms-d...@googlegroups.com>, "Scheuermann, Richard" <RScheu...@jcvi.org>, "wddu...@gmail.com" <wddu...@gmail.com>, "phis...@buffalo.edu" <phis...@buffalo.edu>, "mpj...@gmail.com" <mpj...@gmail.com>, "zheng...@gmail.com" <zheng...@gmail.com>, "hog...@gmail.com" <hog...@gmail.com>, "jansen....@gmail.com" <jansen....@gmail.com>, Randi Vita <rv...@lji.org>, "ifo...@gmail.com" <ifo...@gmail.com>, Barry Smith <ifo...@gmail.com>, "mres...@buffalo.edu" <mres...@buffalo.edu>
Subject: Re: OGMS call April 15th

Hello all,

Due to unforeseen personal circumstances, we will not be having an OGMS development call today. I apologize for any inconvenience. If you have any questions or suggestions, please let me know.

Thanks,

Brian Aevermann

—

Brian Aevermann

Bioinformatics Analyst

J. Craig Venter Institute

4120 Capricorn Lane

La Jolla, CA 92037

858-200-1873

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Sivaram Arabandi, MD

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Aug 4, 2020, 5:16:54 PM8/4/20

to ogms-d...@googlegroups.com

Thanks Brian! Will check it out.

______________________

Sivaram Arabandi, MD, MS

ONTOPRO

W: http://ontopro.com/

Ph: 832.726.2322

Li : https://www.linkedin.com/in/sivaramarabandi/

Think Semantics. Tame Silos.

To view this discussion on the web visit https://groups.google.com/d/msgid/ogms-discuss/020FD6A5-FBBF-485E-A04A-355497B0888E%40jcvi.org.

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