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Chris Mungall
11/17/21
[Obo-taxonomy] Question regarding mapping of NCBITaxon dump to OBO
I would like to solicit opinions on a proposal to make an alteration to the algorithm that creates
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[Obo-taxonomy] Question regarding mapping of NCBITaxon dump to OBO
I would like to solicit opinions on a proposal to make an alteration to the algorithm that creates
11/17/21
Dr. Sanju Tiwari
4/6/21
[Obo-taxonomy] First CFP of KGSWC 2021 Ibero-American Third Edition
##Apologies for Cross Posting#### KGSWC 2021 Third Ibero-American Knowledge Graph and Semantic Web
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[Obo-taxonomy] First CFP of KGSWC 2021 Ibero-American Third Edition
##Apologies for Cross Posting#### KGSWC 2021 Third Ibero-American Knowledge Graph and Semantic Web
4/6/21
Chris Mungall
2
2/20/20
Re: [Obo-taxonomy] ncbitaxon contact info
Actually I see in the ticket that Frederic is it - great! Can you update, Randi? https://github.com/
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Re: [Obo-taxonomy] ncbitaxon contact info
Actually I see in the ticket that Frederic is it - great! Can you update, Randi? https://github.com/
2/20/20
Chris Mungall
,
Peter Midford
2
7/28/17
[Obo-taxonomy] Migration of obo-taxonomy list to google groups
Hi Chris, Checking, it seems I'm currently not even listed as subscribed on the google group,
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[Obo-taxonomy] Migration of obo-taxonomy list to google groups
Hi Chris, Checking, it seems I'm currently not even listed as subscribed on the google group,
7/28/17
SourceForge.net
6/10/17
Important Account Information - Reconfirm Mailing List Subscriptions
Hi, Thanks for being a SourceForge user. Our records indicate that you are subscribed to the
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Important Account Information - Reconfirm Mailing List Subscriptions
Hi, Thanks for being a SourceForge user. Our records indicate that you are subscribed to the
6/10/17
Chris Mungall
10/7/15
[Obo-taxonomy] new ncbitaxon release and build-ncbitaxon project moved to github
I just pushed a new release, will be available tomorrow. Note this doubles the size of the taxslim
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[Obo-taxonomy] new ncbitaxon release and build-ncbitaxon project moved to github
I just pushed a new release, will be available tomorrow. Note this doubles the size of the taxslim
10/7/15
Chris Mungall
,
Peter Midford
2
9/9/15
[Obo-taxonomy] 2015-09-05 release of NCBITaxon
Thanks for this. I probably won't be able to give it a try until next week, but hoping to see
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[Obo-taxonomy] 2015-09-05 release of NCBITaxon
Thanks for this. I probably won't be able to give it a try until next week, but hoping to see
9/9/15
Chris Mungall
, …
Melanie Courtot
9
7/21/14
Re: [Obo-taxonomy] NCBI taxonomy update
Ideally yes - after sequencing, NCBI would use those IDs. Though I agree with your assessment and I
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Re: [Obo-taxonomy] NCBI taxonomy update
Ideally yes - after sequencing, NCBI would use those IDs. Though I agree with your assessment and I
7/21/14
Chris Mungall
,
Erick Antezana
2
3/18/14
[Obo-taxonomy] New release of ncbitaxon obo and owl
I vote for having it every two months (we do regular updates on that basis but we expect to perform
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[Obo-taxonomy] New release of ncbitaxon obo and owl
I vote for having it every two months (we do regular updates on that basis but we expect to perform
3/18/14
Erick Antezana
3/18/14
[Obo-taxonomy] Postdoc position - Bio-Ontologist (m/f)
*** Apologies for cross-posting *** The plant biotechnology Innovation center of Bayer in Gent is
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[Obo-taxonomy] Postdoc position - Bio-Ontologist (m/f)
*** Apologies for cross-posting *** The plant biotechnology Innovation center of Bayer in Gent is
3/18/14
Peter Midford
,
Melanie Courtot
2
2/3/14
[Obo-taxonomy] Request to add Vertebrate Taxonomy Ontology
Hi Peter, I had created a ticket at https://code.google.com/p/obo-foundry-operations-committee/issues
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[Obo-taxonomy] Request to add Vertebrate Taxonomy Ontology
Hi Peter, I had created a ticket at https://code.google.com/p/obo-foundry-operations-committee/issues
2/3/14
Melissa Haendel
, …
Barry Smith
8
12/21/13
Re: [Obo-taxonomy] Comments and questions on the PCO
On Fri, Dec 20, 2013 at 7:07 PM, Ramona Walls <rlwal...@gmail.com> wrote: So, perhaps the
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Re: [Obo-taxonomy] Comments and questions on the PCO
On Fri, Dec 20, 2013 at 7:07 PM, Ramona Walls <rlwal...@gmail.com> wrote: So, perhaps the
12/21/13
Peter Midford
,
Heiko Dietze
2
12/13/13
Re: [Obo-taxonomy] NCBITaxon
Hello Peter, this is an excerpt from the NCBI taxonomy FAQ, see here: http://www.ncbi.nlm.nih.gov/
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Re: [Obo-taxonomy] NCBITaxon
Hello Peter, this is an excerpt from the NCBI taxonomy FAQ, see here: http://www.ncbi.nlm.nih.gov/
12/13/13
Bjoern Peters
, …
Chris Mungall
9
11/9/12
[Obo-taxonomy] Updates and disjoints of NCBI taxonomy in OWL
Update: obo/ncbitaxon.owl now reflects the contents of the source NCBI taxonomy as of Nov 7. James is
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[Obo-taxonomy] Updates and disjoints of NCBI taxonomy in OWL
Update: obo/ncbitaxon.owl now reflects the contents of the source NCBI taxonomy as of Nov 7. James is
11/9/12
Chris Mungall
12/2/11
[Obo-taxonomy] Fwd: IUCN Red List and national Red Lists in RDF
FYI The BBC wildlife ontology overlaps both taxonomy and environments Begin forwarded message: Resent
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[Obo-taxonomy] Fwd: IUCN Red List and national Red Lists in RDF
FYI The BBC wildlife ontology overlaps both taxonomy and environments Begin forwarded message: Resent
12/2/11
Alan Ruttenberg
5/29/11
[Obo-taxonomy] 2011 International Conference on Biomedical Ontology, Early Bird Registration ends soon
The 2011 International Conference on Biomedical Ontology will take place in Buffalo, NY, with
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[Obo-taxonomy] 2011 International Conference on Biomedical Ontology, Early Bird Registration ends soon
The 2011 International Conference on Biomedical Ontology will take place in Buffalo, NY, with
5/29/11
Peter Midford
4/2/11
[Obo-taxonomy] Fwd: [Obo-discuss] taxonomy ranks ontology?
Begin forwarded message: From: "Adam M. Goldstein" <z_californianus-dated-1302226864.544
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[Obo-taxonomy] Fwd: [Obo-discuss] taxonomy ranks ontology?
Begin forwarded message: From: "Adam M. Goldstein" <z_californianus-dated-1302226864.544
4/2/11
Erick Antezana
, …
Peter Midford
25
4/2/11
[Obo-taxonomy] taxonomy ranks ontology?
Jonathan, It wasn't my intention to leave you hanging. I'm not sure the answer I can give
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[Obo-taxonomy] taxonomy ranks ontology?
Jonathan, It wasn't my intention to leave you hanging. I'm not sure the answer I can give
4/2/11
Chris Mungall
,
Alan Ruttenberg
2
11/2/10
Re: [Obo-taxonomy] [Phenoscape] Taxonomic synonyms
On Tue, Nov 2, 2010 at 1:37 PM, Chris Mungall <cjmu...@lbl.gov> wrote: > > Hi Peter
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Re: [Obo-taxonomy] [Phenoscape] Taxonomic synonyms
On Tue, Nov 2, 2010 at 1:37 PM, Chris Mungall <cjmu...@lbl.gov> wrote: > > Hi Peter
11/2/10
peter midford
2
11/2/10
[Obo-taxonomy] Taxonomic synonyms
Hi Chris, Hilmar asked me to clarify what I'm trying to do with this - all I'm trying to do
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[Obo-taxonomy] Taxonomic synonyms
Hi Chris, Hilmar asked me to clarify what I'm trying to do with this - all I'm trying to do
11/2/10
Xianhua Liu
, …
Peter Midford
5
10/25/10
[Obo-taxonomy] forbidden error when access term URLs
Chris, The OBO file is there on the foundry, but the link to the OWL version on the foundry page is
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[Obo-taxonomy] forbidden error when access term URLs
Chris, The OBO file is there on the foundry, but the link to the OWL version on the foundry page is
10/25/10
Alan Ruttenberg
3/16/10
[Obo-taxonomy] Speciation process ontology?
Adam is interested in working with literature that discusses evolution. Are any of you aware of or
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[Obo-taxonomy] Speciation process ontology?
Adam is interested in working with literature that discusses evolution. Are any of you aware of or
3/16/10
Peter Midford
, …
Alan Ruttenberg
6
3/16/10
[Obo-taxonomy] Questions about your 2008 taxonomy paper
On Mon, Mar 15, 2010 at 5:04 PM, Chris Mungall <c...@berkeleybop.org> wrote: > > On Mar 15
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[Obo-taxonomy] Questions about your 2008 taxonomy paper
On Mon, Mar 15, 2010 at 5:04 PM, Chris Mungall <c...@berkeleybop.org> wrote: > > On Mar 15
3/16/10
Alan Ruttenberg
2/1/10
[Obo-taxonomy] Lesson needed
I'm looking at the raw NCBI taxonomy dump and I see a bunch of different fields, listed below.
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[Obo-taxonomy] Lesson needed
I'm looking at the raw NCBI taxonomy dump and I see a bunch of different fields, listed below.
2/1/10
Peter Midford
, …
Ward Blondé
12
1/7/10
[Obo-taxonomy] Resubmission of taxonomic rank ontology
Hi Ward, Although a few people favor the use of meta-classes, several taxonomy ontologies (NCBI, TTO,
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[Obo-taxonomy] Resubmission of taxonomic rank ontology
Hi Ward, Although a few people favor the use of meta-classes, several taxonomy ontologies (NCBI, TTO,
1/7/10
Chris Mungall
, …
Peter Midford
15
8/17/09
[Obo-taxonomy] Amphibian Taxonomic Ontology
Nico, Thanks, Thau's page does have some interesting stuff. Peter On Aug 14, 2009, at 21:39, Nico
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[Obo-taxonomy] Amphibian Taxonomic Ontology
Nico, Thanks, Thau's page does have some interesting stuff. Peter On Aug 14, 2009, at 21:39, Nico
8/17/09
Peter Midford
,
Chris Mungall
2
8/14/09
[Obo-taxonomy] ncbi_taxonomy.obo?
it's still here: http://purl.org/obo/obo-all/ncbi_taxonomy/ncbi_taxonomy.obo the link from here
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[Obo-taxonomy] ncbi_taxonomy.obo?
it's still here: http://purl.org/obo/obo-all/ncbi_taxonomy/ncbi_taxonomy.obo the link from here
8/14/09
Peter E. Midford
7/7/09
Re: [Obo-taxonomy] [Obo-discuss] Amphibian Taxonomic Ontology
Sarah, I've had a look over your proposed ATO and I've got a couple of comments: 1. Most taxa
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Re: [Obo-taxonomy] [Obo-discuss] Amphibian Taxonomic Ontology
Sarah, I've had a look over your proposed ATO and I've got a couple of comments: 1. Most taxa
7/7/09
Hilmar Lapp
6/23/09
[Obo-taxonomy] Fwd: Amphibian Taxonomic Ontology
Of interest here too, I thought. -hilmar Begin forwarded message: From: "sbhdbe" <sbhdbe
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[Obo-taxonomy] Fwd: Amphibian Taxonomic Ontology
Of interest here too, I thought. -hilmar Begin forwarded message: From: "sbhdbe" <sbhdbe
6/23/09
Barry Smith
, …
Nagarjuna G.
18
6/9/09
Re: [Obo-taxonomy] [Obo-discuss] Proposal for a rank ontology (vocabulary)
On Tuesday 09 Jun 2009 8:31:29 pm Nagarjuna G. wrote: > > Following the above suggestion: we
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Re: [Obo-taxonomy] [Obo-discuss] Proposal for a rank ontology (vocabulary)
On Tuesday 09 Jun 2009 8:31:29 pm Nagarjuna G. wrote: > > Following the above suggestion: we
6/9/09