obo unit tests

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Nomi Harris

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Mar 18, 2010, 4:30:13 AM3/18/10

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Preparing to run unit tests for obo...
svn updating OBO...
Rebuilding...
Running 54 or so tests (some may be skipped).

Skipping AAOBOTest

Skipping AbstractAnnotationTest

Skipping AbstractOBOTest

Skipping AbstractReasonerFaceoffTest

Skipping AbstractReasonerTest

ant runatest -Djunit.test.class.name="org.obo.test.AdvancedReasonerTest" >/users/nomi/workspace/OBO/testlogs/AdvancedReasonerTest.out 2>&1
AdvancedReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 5.328 sec

Skipping AllReasonerTests

Skipping AllReasonerTestsWithFCR

Skipping AllReasonerTestsWithLPR

Skipping AllReasonerTestsWithPellet

Skipping AllReasonerTestsWithRBR

Skipping AllTests

ant runatest -Djunit.test.class.name="org.obo.test.AnnotationStanzaFileTest" >/users/nomi/workspace/OBO/testlogs/AnnotationStanzaFileTest.out 2>&1
AnnotationStanzaFileTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.048 sec

ant runatest -Djunit.test.class.name="org.obo.test.CardinalityIntersectionTest" >/users/nomi/workspace/OBO/testlogs/CardinalityIntersectionTest.out 2>&1
CardinalityIntersectionTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.409 sec

ant runatest -Djunit.test.class.name="org.obo.test.CardinalityTest" >/users/nomi/workspace/OBO/testlogs/CardinalityTest.out 2>&1
CardinalityTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.624 sec

ant runatest -Djunit.test.class.name="org.obo.test.DanglingObjectTest" >/users/nomi/workspace/OBO/testlogs/DanglingObjectTest.out 2>&1
DanglingObjectTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.743 sec

ant runatest -Djunit.test.class.name="org.obo.test.DisjointnessTest" >/users/nomi/workspace/OBO/testlogs/DisjointnessTest.out 2>&1
DisjointnessTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.868 sec

ant runatest -Djunit.test.class.name="org.obo.test.DisjointnessTest2" >/users/nomi/workspace/OBO/testlogs/DisjointnessTest2.out 2>&1
DisjointnessTest2: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.776 sec

ant runatest -Djunit.test.class.name="org.obo.test.FilterTest" >/users/nomi/workspace/OBO/testlogs/FilterTest.out 2>&1
FilterTest: Tests run: 7, Failures: 1, Errors: 0, Time elapsed: 1.499 sec

ant runatest -Djunit.test.class.name="org.obo.test.FixedCacheMutableLinkDatabaseTest" >/users/nomi/workspace/OBO/testlogs/FixedCacheMutableLinkDatabaseTest.out 2>&1
FixedCacheMutableLinkDatabaseTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 1.955 sec

ant runatest -Djunit.test.class.name="org.obo.test.GOAnnotationFilePlusOntologyTest" >/users/nomi/workspace/OBO/testlogs/GOAnnotationFilePlusOntologyTest.out 2>&1
GOAnnotationFilePlusOntologyTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 45.193 sec

ant runatest -Djunit.test.class.name="org.obo.test.GOAnnotationFileTest" >/users/nomi/workspace/OBO/testlogs/GOAnnotationFileTest.out 2>&1
GOAnnotationFileTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 3.339 sec

ant runatest -Djunit.test.class.name="org.obo.test.HoldsOverChainReasonerTest" >/users/nomi/workspace/OBO/testlogs/HoldsOverChainReasonerTest.out 2>&1
HoldsOverChainReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.572 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDMapperTest" >/users/nomi/workspace/OBO/testlogs/IDMapperTest.out 2>&1
IDMapperTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 13.128 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDMapperTestWithIDLifecycle" >/users/nomi/workspace/OBO/testlogs/IDMapperTestWithIDLifecycle.out 2>&1
IDMapperTestWithIDLifecycle: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 3.764 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDMapperTestWithReasoner" >/users/nomi/workspace/OBO/testlogs/IDMapperTestWithReasoner.out 2>&1
IDMapperTestWithReasoner: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.21 sec

ant runatest -Djunit.test.class.name="org.obo.test.IDUpdateTest" >/users/nomi/workspace/OBO/testlogs/IDUpdateTest.out 2>&1
IDUpdateTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.721 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionBloodCellExampleTest" >/users/nomi/workspace/OBO/testlogs/IntersectionBloodCellExampleTest.out 2>&1
IntersectionBloodCellExampleTest: Tests run: 2, Failures: 0, Errors: 0, Time elapsed: 45.538 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionBloodCellExampleTestWithPellet" >/users/nomi/workspace/OBO/testlogs/IntersectionBloodCellExampleTestWithPellet.out 2>&1
IntersectionBloodCellExampleTestWithPellet: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.064 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionCamphorCatabolismExampleTest" >/users/nomi/workspace/OBO/testlogs/IntersectionCamphorCatabolismExampleTest.out 2>&1
IntersectionCamphorCatabolismExampleTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.968 sec

ant runatest -Djunit.test.class.name="org.obo.test.IntersectionUsingSubRelationsTest" >/users/nomi/workspace/OBO/testlogs/IntersectionUsingSubRelationsTest.out 2>&1
IntersectionUsingSubRelationsTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.817 sec

ant runatest -Djunit.test.class.name="org.obo.test.InverseAlwaysImpliedTest" >/users/nomi/workspace/OBO/testlogs/InverseAlwaysImpliedTest.out 2>&1
InverseAlwaysImpliedTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.723 sec

ant runatest -Djunit.test.class.name="org.obo.test.LinkPileReasonerTest" >/users/nomi/workspace/OBO/testlogs/LinkPileReasonerTest.out 2>&1
LinkPileReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 12.761 sec

ant runatest -Djunit.test.class.name="org.obo.test.NamespaceTest" >/users/nomi/workspace/OBO/testlogs/NamespaceTest.out 2>&1
NamespaceTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.863 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDAnnotationSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDAnnotationSaveTest.out 2>&1
OBDAnnotationSaveTest: Tests run: 3, Failures: 0, Errors: 3, Time elapsed: 3.335 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDPostcompSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDPostcompSaveTest.out 2>&1
OBDPostcompSaveTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 2.032 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDQueryTest" >/users/nomi/workspace/OBO/testlogs/OBDQueryTest.out 2>&1
OBDQueryTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0.35 sec

ant runatest -Djunit.test.class.name="org.obo.test.OBDSaveTest" >/users/nomi/workspace/OBO/testlogs/OBDSaveTest.out 2>&1
OBDSaveTest: Tests run: 3, Failures: 0, Errors: 3, Time elapsed: 2.234 sec

ant runatest -Djunit.test.class.name="org.obo.test.PostcompSyntaxFileTest" >/users/nomi/workspace/OBO/testlogs/PostcompSyntaxFileTest.out 2>&1
PostcompSyntaxFileTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.377 sec

ant runatest -Djunit.test.class.name="org.obo.test.PropertyIntersectionTest" >/users/nomi/workspace/OBO/testlogs/PropertyIntersectionTest.out 2>&1
PropertyIntersectionTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.771 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerFilterTest" >/users/nomi/workspace/OBO/testlogs/ReasonerFilterTest.out 2>&1
ReasonerFilterTest: Tests run: 7, Failures: 2, Errors: 0, Time elapsed: 2.731 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerRedundancyTest" >/users/nomi/workspace/OBO/testlogs/ReasonerRedundancyTest.out 2>&1
ReasonerRedundancyTest: Tests run: 3, Failures: 0, Errors: 0, Time elapsed: 0.777 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerRedundancyTest2" >/users/nomi/workspace/OBO/testlogs/ReasonerRedundancyTest2.out 2>&1
ReasonerRedundancyTest2: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.514 sec

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerTest" >/users/nomi/workspace/OBO/testlogs/ReasonerTest.out 2>&1
ReasonerTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0 sec
(may have timed out)

ant runatest -Djunit.test.class.name="org.obo.test.ReasonerUndoRedoTest" >/users/nomi/workspace/OBO/testlogs/ReasonerUndoRedoTest.out 2>&1
ReasonerUndoRedoTest: Tests run: 1, Failures: 0, Errors: 1, Time elapsed: 0 sec
(may have timed out)

ant runatest -Djunit.test.class.name="org.obo.test.RedundancyTest" >/users/nomi/workspace/OBO/testlogs/RedundancyTest.out 2>&1
RedundancyTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.659 sec

ant runatest -Djunit.test.class.name="org.obo.test.RelationPropertiesReasonerTest" >/users/nomi/workspace/OBO/testlogs/RelationPropertiesReasonerTest.out 2>&1
RelationPropertiesReasonerTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.511 sec

ant runatest -Djunit.test.class.name="org.obo.test.RemoveRedundantLinksTest" >/users/nomi/workspace/OBO/testlogs/RemoveRedundantLinksTest.out 2>&1
RemoveRedundantLinksTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 1.339 sec

ant runatest -Djunit.test.class.name="org.obo.test.SimpleReasonerTest" >/users/nomi/workspace/OBO/testlogs/SimpleReasonerTest.out 2>&1
SimpleReasonerTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 0.673 sec

ant runatest -Djunit.test.class.name="org.obo.test.SubRelationReasonerTest" >/users/nomi/workspace/OBO/testlogs/SubRelationReasonerTest.out 2>&1
SubRelationReasonerTest: Tests run: 10, Failures: 0, Errors: 1, Time elapsed: 1.416 sec

ant runatest -Djunit.test.class.name="org.obo.test.TransitivityTest" >/users/nomi/workspace/OBO/testlogs/TransitivityTest.out 2>&1
TransitivityTest: Tests run: 2, Failures: 1, Errors: 0, Time elapsed: 0.888 sec

ant runatest -Djunit.test.class.name="org.obo.test.TrimmingLibraryTest" >/users/nomi/workspace/OBO/testlogs/TrimmingLibraryTest.out 2>&1
TrimmingLibraryTest: Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 9.073 sec

ant runatest -Djunit.test.class.name="org.obo.test.TrimmingTest" >/users/nomi/workspace/OBO/testlogs/TrimmingTest.out 2>&1
TrimmingTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 7.203 sec

ant runatest -Djunit.test.class.name="org.obo.test.WebSearchUtilTest" >/users/nomi/workspace/OBO/testlogs/WebSearchUtilTest.out 2>&1
WebSearchUtilTest: Tests run: 1, Failures: 0, Errors: 0, Time elapsed: 2.025 sec

Begin time: Thu Mar 18 01:00:01 PDT 2010. End time: Thu Mar 18 01:30:13 PDT 2010
Output from tests is in /users/nomi/workspace/OBO/testlogs
Ran 43 obo unit tests. 24 passed.

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