[Obo-diffs] New to Definition Changes
jen...@ladle.lbl.gov
The definitions of the following to terms changed as of 10 Nov 2017:
TO:0000144 : milled rice yield
(was milled rice)
OLD: Rice kernels that have been milled to remove the bran, leaving \"white\" or milled rice.
NEW: A grain yield trait (TO:0000396) which is the proportion of kernels remaining after milling to remove the bran.
TO:0000222 : head rice yield
(was head rice)
OLD: The 3/4 or longer whole milled kernels separated from the total milled rice.
NEW: A grain yield trait (TO:0000396) which is the amount of whole (3/4 of original length or longer) milled kernels separated from the total amount of milled rice.
TO:0000515 : relative growth rate
OLD: The relative growth of the plant determined after a given treatment as compared to the one determined under normal conditions.
NEW: A vigor trait (TO:0000250) that is the increase in aboveground biomass in a defined period of time.
OLD: The total sodium ion content measured in a plant or a plant part.
NEW: A mineral and ion content trait (TO:0000465) which is the sodium cation (CHEBI:29101) composition in a plant structure (PO:0009011).
TO:0000609 : potassium content
OLD: The total potassium ion content measured in a plant or a plant part.
NEW: A mineral and ion content trait (TO:0000465) which is the potassium cation (CHEBI:29103) composition in a plant structure (PO:0009011).
TO:0000934 : photoperiod-sensitive flowering time trait
OLD: A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (EO:0007199) and short photoperiod (EO:0007200) environments.
NEW: A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (PECO:0007199) and short photoperiod (PECO:0007200) environments.
TO:0001024 : phosphorus content
OLD: A mineral and ion content trait (TO:0000465) which is the amount of phosphorous (CHEBI:28659) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the phosphorus cation (CHEBI:33467) composition in a plant structure (PO:0009011).
OLD: A grain yield trait (TO:0000396) which is the number of grains dehulled/with hull in a given inflorescence (PO:0009049).
NEW: A fruit number trait (TO:0000894) which is the number of grains (caryopsis fruit; PO:0030104) in an infructescence (PO:0006342).
TO:0006042 : lithium content
(was lithium concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of lithium (CHEBI:33298) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the lithium cation (CHEBI:49713) composition in a plant structure (PO:0009011).
TO:0006043 : boron content
(was boron concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of boron (CHEBI:22916) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the boron cation (CHEBI:30168) composition in a plant structure (PO:0009011).
TO:0006044 : magnesium content
(was magnesium concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of magnesium (CHEBI:25108) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the magnesium cation (CHEBI:18420) composition in a plant structure (PO:0009011).
TO:0006046 : sulfur content
(was sulfur concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of sulfur (CHEBI:26835) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the sulfur cation (CHEBI:29832) composition in a plant structure (PO:0009011).
TO:0006047 : calcium content trait
(was calcium concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of calcium (CHEBI:22985) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the calcium cation (CHEBI:39123) composition in a plant structure (PO:0009011).
TO:0006049 : iron concentration
OLD: An iron content (TO:0020089) which is the concentration of iron (CHEBI:24873) in some plant structure (PO:0009011)
NEW: An iron content (TO:0020089) which is the concentration of iron cation (CHEBI:24875) in a plant structure (PO:0009011)
TO:0006050 : cobalt concentration
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of cobalt (CHEBI:33888) in some plant structure (PO:0009011).
NEW: A cobalt content trait (TO:0001044) which is the concentration of cobalt cation (CHEBI:23336) in a plant structure (PO:0009011).
TO:0006051 : nickel content
(was nickel concenteration)
OLD: The total Nickel ion concentration measured in a given volume of a plant or a plant part or plant extract.
NEW: A mineral and ion content trait (TO:0000465) which is the nickel cation (CHEBI:25516) composition in a plant structure (PO:0009011).
TO:0006052 : copper concentration
OLD: A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in some plant structure (PO:0009011)
NEW: A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in a plant structure (PO:0009011)
TO:0006054 : arsenic content trait
(was arsenic concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of arsenic (CHEBI:22632) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the arsenic cation (CHEBI:35829) composition in a plant structure (PO:0009011).
TO:0006055 : selenium content
(was selenium concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of selenium (CHEBI:26628) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the selenium ion (CHEBI:60250) composition in a plant structure (PO:0009011).
TO:0006056 : molybdenum content
(was molybdenum concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of molybdenum (CHEBI:25370) in some plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the molybdenum cation (CHEBI:37239) composition in a plant structure (PO:0009011).
TO:0006059 : cadmium content trait
(was cadmium concentration)
OLD: A mineral and ion content related trait (TO:0000465) which is the concentration of cadmium (CHEBI:22978) in some plant structure (PO:0009011).\n.
NEW: A mineral and ion content trait (TO:0000465) which is the cadmium cation (CHEBI:63063) composition in a plant structure (PO:0009011).
TO:0020003 : shoot system potassium content
(was shoot potassium content)
OLD: The percent content of potassium ion measured in the shoots of the plant.
NEW: A potassium content trait (TO:0000609) which is the potassium cation (CHEBI:29103) composition in a shoot system (PO:0009006).
TO:0020004 : shoot system sodium content
(was shoot sodium content)
OLD: The percent sodium ion content measured in the shoot.
NEW: A sodium content trait (TO:0000608) which is the sodium cation (CHEBI:29101) composition in a shoot system (PO:0009006).
TO:0020089 : iron content trait
(was iron content)
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of iron (CHEBI:24873) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the iron cation (CHEBI:24875) composition in a plant structure (PO:0009011).
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of zinc (CHEBI:27364) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the amount of zinc (CHEBI:27364) in a plant structure (PO:0009011).
TO:0020091 : manganese content
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of manganese (CHEBI:25154) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the amount of manganese (CHEBI:25154) in a plant structure (PO:0009011).
TO:0020092 : copper content trait
(was copper content)
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of copper (CHEBI:23377) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the copper cation (CHEBI:23378) composition in a plant structure (PO:0009011).
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011).
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of nitrate (CHEBI:17632) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the amount of nitrate (CHEBI:17632) in a plant structure (PO:0009011).
TO:0020102 : phosphate content
OLD: A mineral and ion content related trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011).
NEW: A mineral and ion content trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011).
TO:0020114 : shoot system phosphorus content
(was shoot phosphorus content)
OLD: Amount of phosphorus in the shoot.
NEW: A phosphorus content trait (TO:0001024) which is the phosphorus cation (CHEBI:33467) composition in a shoot system (PO:0009006).
Signed,
The to File Watching Daemon
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