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obo-anatomy

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Richard Dann LeDuc, Chris Mungall2

6/8/21

[Obo-anatomy] Ovarian anatomy nomenclature update

Hi Richard, Yes, please use the tracker I am not sure how many people read this list any more, the

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[Obo-anatomy] Ovarian anatomy nomenclature update

Hi Richard, Yes, please use the tracker I am not sure how many people read this list any more, the

6/8/21

9/30/20

[Obo-anatomy] Taxon constraint tickets in CL and Uberon

I made a GitHub project to organize various tickets in CL and Uberon trackers pertaining to taxon

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[Obo-anatomy] Taxon constraint tickets in CL and Uberon

I made a GitHub project to organize various tickets in CL and Uberon trackers pertaining to taxon

9/30/20

2/14/20

[Obo-anatomy] Happy Valentines day from Uberon

We had a lot of fun making the heart hierarchy in Uberon a few years ago. I made a thread about it,

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[Obo-anatomy] Happy Valentines day from Uberon

We had a lot of fun making the heart hierarchy in Uberon a few years ago. I made a thread about it,

2/14/20

9/10/18

[Obo-anatomy] is the hepatobiliary system part of the digestive system?

Weight in here: https://github.com/obophenotype/uberon/issues/1456 Thanks!

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[Obo-anatomy] is the hepatobiliary system part of the digestive system?

Weight in here: https://github.com/obophenotype/uberon/issues/1456 Thanks!

9/10/18

Guille Reales, … Frederic Bastian6

5/14/18

[Obo-anatomy] UBERON. A way to retrieve relationships?

Thank you for your comments Frederic, I'll definitely contact you in the next future for more

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[Obo-anatomy] UBERON. A way to retrieve relationships?

Thank you for your comments Frederic, I'll definitely contact you in the next future for more

5/14/18

5/4/18

[Obo-anatomy] Fwd: [OBOFoundry/OBOFoundry.github.io] Request for COLL prefix and PURL (#610)

Hi, anyone have any time to provide guidance to Luis? Specifically members of obo-arthropod community

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[Obo-anatomy] Fwd: [OBOFoundry/OBOFoundry.github.io] Request for COLL prefix and PURL (#610)

Hi, anyone have any time to provide guidance to Luis? Specifically members of obo-arthropod community

5/4/18

ad...@bioontology.org, Chris Mungall4

11/21/17

[Obo-anatomy] [BioPortal] Load from URL failure for Spatial Ontology

Hi John, We're getting these messages fro BSPO and CARO. It looks like you have old sourceforge

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[Obo-anatomy] [BioPortal] Load from URL failure for Spatial Ontology

Hi John, We're getting these messages fro BSPO and CARO. It looks like you have old sourceforge

11/21/17

ad...@bioontology.org2

11/21/17

[Obo-anatomy] [BioPortal] Load from URL failure for Common Anatomy Reference Ontology

BioPortal failed to load Common Anatomy Reference Ontology (CARO) from URL: http://obo.cvs.

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[Obo-anatomy] [BioPortal] Load from URL failure for Common Anatomy Reference Ontology

BioPortal failed to load Common Anatomy Reference Ontology (CARO) from URL: http://obo.cvs.

11/21/17

ad...@bioontology.org

9/27/17

[Obo-anatomy] [BioPortal] Load from URL failure for Spatial Ontology

BioPortal failed to load Spatial Ontology (BSPO) from URL: http://obo.cvs.sourceforge.net/*checkout*/

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[Obo-anatomy] [BioPortal] Load from URL failure for Spatial Ontology

BioPortal failed to load Spatial Ontology (BSPO) from URL: http://obo.cvs.sourceforge.net/*checkout*/

9/27/17

ad...@bioontology.org

9/27/17

[Obo-anatomy] [BioPortal] Load from URL failure for Common Anatomy Reference Ontology

BioPortal failed to load Common Anatomy Reference Ontology (CARO) from URL: http://obo.cvs.

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[Obo-anatomy] [BioPortal] Load from URL failure for Common Anatomy Reference Ontology

BioPortal failed to load Common Anatomy Reference Ontology (CARO) from URL: http://obo.cvs.

9/27/17

SourceForge.net

6/30/17

Reconfirm subscription to obo-anatomy mailing list

Hi, This is a reminder to reconfirm your subscriptions to these mailing lists: obo-anatomy If you are

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Reconfirm subscription to obo-anatomy mailing list

Hi, This is a reminder to reconfirm your subscriptions to these mailing lists: obo-anatomy If you are

6/30/17

SourceForge.net

6/9/17

Important Account Information - Reconfirm Mailing List Subscriptions

Hi, Thanks for being a SourceForge user. Our records indicate that you are subscribed to the

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Important Account Information - Reconfirm Mailing List Subscriptions

Hi, Thanks for being a SourceForge user. Our records indicate that you are subscribed to the

6/9/17

Chris Mungall, … Robb, Sofia10

2/3/17

[Obo-anatomy] Best practice for citing manuscripts with DOIs etc

I like the way GO formats theirs. I will go with PLANA_REF:000000 — Sofia MC Robb, Ph.D Genomic

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[Obo-anatomy] Best practice for citing manuscripts with DOIs etc

I like the way GO formats theirs. I will go with PLANA_REF:000000 — Sofia MC Robb, Ph.D Genomic

2/3/17

2/2/17

[Obo-anatomy] dbxref of a citation

Hello, I am creating an obo file with definition lines that have references that cannot be found in

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[Obo-anatomy] dbxref of a citation

Hello, I am creating an obo file with definition lines that have references that cannot be found in

2/2/17

1/30/16

[Obo-anatomy] Uberon 2016-01-26 release

There is a new release of Uberon available, release notes are here: http://uberon.github.io/release/

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[Obo-anatomy] Uberon 2016-01-26 release

There is a new release of Uberon available, release notes are here: http://uberon.github.io/release/

1/30/16

Sofia Robb, … Hilmar Lapp10

8/27/15

[Obo-anatomy] where to begin?

On Aug 19, 2015, at 6:15 PM, Chris Mungall <CJMu...@lbl.gov> wrote: Yes, as it happens, there

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[Obo-anatomy] where to begin?

On Aug 19, 2015, at 6:15 PM, Chris Mungall <CJMu...@lbl.gov> wrote: Yes, as it happens, there

8/27/15

ad...@bioontology.org

8/19/15

[Obo-anatomy] [BioPortal] Load from URL failure for Spatial Ontology

BioPortal failed to load Spatial Ontology (BSPO) from URL: http://obo.cvs.sourceforge.net/*checkout*/

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[Obo-anatomy] [BioPortal] Load from URL failure for Spatial Ontology

BioPortal failed to load Spatial Ontology (BSPO) from URL: http://obo.cvs.sourceforge.net/*checkout*/

8/19/15

ad...@bioontology.org

8/19/15

[Obo-anatomy] [BioPortal] Load from URL failure for Common Anatomy Reference Ontology

BioPortal failed to load Common Anatomy Reference Ontology (CARO) from URL: http://obo.cvs.

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[Obo-anatomy] [BioPortal] Load from URL failure for Common Anatomy Reference Ontology

BioPortal failed to load Common Anatomy Reference Ontology (CARO) from URL: http://obo.cvs.

8/19/15

in...@flipmailer.com

4/18/15

[Obo-anatomy] You have a new notification from ravensar@u.washington.edu. View??

Click here to discover rave...@u.washington.edu's favorite content! New Notification You have a

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[Obo-anatomy] You have a new notification from ravensar@u.washington.edu. View??

Click here to discover rave...@u.washington.edu's favorite content! New Notification You have a

4/18/15

in...@infoaxe.net

4/14/15

[Obo-anatomy] ravensar@u.washington.edu has indicated you're a friend. Accept?

Click here to discover rave...@u.washington.edu's favorite content! rave...@u.washington.edu

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[Obo-anatomy] ravensar@u.washington.edu has indicated you're a friend. Accept?

Click here to discover rave...@u.washington.edu's favorite content! rave...@u.washington.edu

4/14/15

3/29/15

[Obo-anatomy] New version zebrafish anatomy ontology available

Hi, We have updated the zebrafish anatomical ontology here at ZFIN. The file can be reached via http:

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[Obo-anatomy] New version zebrafish anatomy ontology available

Hi, We have updated the zebrafish anatomical ontology here at ZFIN. The file can be reached via http:

3/29/15

3/15/15

[Obo-anatomy] Namespace request for 2 anatomy ontologies: CTENO and MOLO

In preparation for the next uberon release, which will incorporate sponge, ctenophore and cephalopod

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[Obo-anatomy] Namespace request for 2 anatomy ontologies: CTENO and MOLO

In preparation for the next uberon release, which will incorporate sponge, ctenophore and cephalopod

3/15/15

9/4/14

[Obo-anatomy] [bioportal-announce] CFP: Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics

CALL FOR PAPERS Visualizations and User Interfaces for Knowledge Engineering and Linked Data

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[Obo-anatomy] [bioportal-announce] CFP: Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics

CALL FOR PAPERS Visualizations and User Interfaces for Knowledge Engineering and Linked Data

9/4/14

6/20/14

[Obo-anatomy] My Corporis Fabrica: Biomechanical functions of anatomical structures

MCF is an ontology that extends the FMA with a biomechanical function ontology, with structure-

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[Obo-anatomy] My Corporis Fabrica: Biomechanical functions of anatomical structures

MCF is an ontology that extends the FMA with a biomechanical function ontology, with structure-

6/20/14

Chris Mungall, … Jonathan Bard3

4/25/14

[Obo-anatomy] digits: where do they start

Chris You have picked up on the classic problem: where should boundaries be set? On the basis of

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[Obo-anatomy] digits: where do they start

Chris You have picked up on the classic problem: where should boundaries be set? On the basis of

4/25/14

Ray Fergerson, Chris Mungall3

4/4/14

[Obo-anatomy] Uberon parsing failing

Great. Thanks. Want to make sure that I have the right download address. Currently we download from:

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[Obo-anatomy] Uberon parsing failing

Great. Thanks. Want to make sure that I have the right download address. Currently we download from:

4/4/14

Melissa Haendel

4/3/14

[Obo-anatomy] CfP - Phenotype Day @ BioLink/BioOntologies SIG, ISMB, 12 July 2014

*****************************************************************************************************

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[Obo-anatomy] CfP - Phenotype Day @ BioLink/BioOntologies SIG, ISMB, 12 July 2014

*****************************************************************************************************

4/3/14

4/1/14

[Obo-anatomy] Mapping the Embryo for Developmental Biologists & Stem Cell Researchers; LifeMap Discovery – a Roadmap of Mammalian Cell Ontology

Just spotted this today http://thenode.biologists.com/mapping-the-embryo-for-developmental-biologists

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[Obo-anatomy] Mapping the Embryo for Developmental Biologists & Stem Cell Researchers; LifeMap Discovery – a Roadmap of Mammalian Cell Ontology

Just spotted this today http://thenode.biologists.com/mapping-the-embryo-for-developmental-biologists

4/1/14

Chris Mungall, … Suzanna Lewis3

3/11/14

[Obo-anatomy] EMAPA browser at MGI

This is one step closer to having the temporal progression of the different anatomical structures

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[Obo-anatomy] EMAPA browser at MGI

This is one step closer to having the temporal progression of the different anatomical structures

3/11/14

Chris Mungall, Suzanna Lewis2

3/1/14

[Obo-anatomy] ZFA paper in JBMS

well done! On Feb 28, 2014, at 5:09 PM, Chris Mungall <cjmu...@lbl.gov> wrote: http://www.

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[Obo-anatomy] ZFA paper in JBMS

well done! On Feb 28, 2014, at 5:09 PM, Chris Mungall <cjmu...@lbl.gov> wrote: http://www.

3/1/14

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