OBI release 2017-11-07

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James A. Overton

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Nov 14, 2017, 3:54:02 PM11/14/17
to OBI Developers, obi-...@googlegroups.com
Hi everyone,

A new OBI release is available:

- Versioned OWL file: http://purl.obolibrary.org/obo/obi/2017-11-07/obi.owl
- GitHub tag: https://github.com/obi-ontology/obi/releases/tag/v2017-11-07

This release includes 255 new terms since the 2017-09-03 release, list below.

James


OBI:0002189 owl:Class local field potential recording
OBI:0002190 owl:Class courier organization
OBI:0002191 owl:Class courier tracking number
OBI:0002192 owl:Class Leica Peloris rapid tissue processor
OBI:0002193 owl:NamedIndividual Thermo Fisher Scientific
OBI:0002194 owl:Class Microm Ergostar HM200
OBI:0002195 owl:Class microtome blade
OBI:0002196 owl:Class Sakura Low profile Accu-Edge microtome blade
OBI:0002197 owl:Class tissue section thickness
OBI:0002198 owl:Class molecular analysis facility organization
OBI:0002199 owl:Class reason for lack of data item
OBI:0002200 owl:Class cannot be assessed determination
OBI:0002201 owl:Class determination if assay will provide reliable results
OBI:0002202 owl:Class GX
OBI:0002203 owl:Class pTX
OBI:0002204 owl:Class pNX
OBI:0002205 owl:Class histologic grade according to AJCC 7th edition
OBI:0002206 owl:NamedIndividual G1: Well differentiated
OBI:0002207 owl:NamedIndividual G2: Moderately differentiated
OBI:0002208 owl:NamedIndividual G3: Poorly differentiated
OBI:0002209 owl:NamedIndividual G4: Undifferentiated
OBI:0002210 owl:Class histologic grade according to the Fuhrman Nuclear Grading System
OBI:0002211 owl:NamedIndividual G1 (Fuhrman)
OBI:0002212 owl:NamedIndividual G2 (Fuhrman)
OBI:0002213 owl:NamedIndividual G3 (Fuhrman)
OBI:0002214 owl:NamedIndividual G4 (Fuhrman)
OBI:0002215 owl:Class histologic grade for ovarian tumor
OBI:0002216 owl:Class histologic grade for ovarian tumor according to a two-tier grading system
OBI:0002217 owl:NamedIndividual Low grade ovarian tumor
OBI:0002218 owl:NamedIndividual High grade ovarian tumor
OBI:0002219 owl:Class histologic grade for ovarian tumor according to the World Health Organization
OBI:0002220 owl:NamedIndividual G1 (WHO)
OBI:0002221 owl:NamedIndividual G2 (WHO)
OBI:0002222 owl:NamedIndividual G3 (WHO)
OBI:0002223 owl:NamedIndividual G4 (WHO)
OBI:0002224 owl:Class pathologic primary tumor stage for colon and rectum according to AJCC 7th edition
OBI:0002225 owl:NamedIndividual pT0 (colon)
OBI:0002226 owl:NamedIndividual pTis (colon)
OBI:0002227 owl:NamedIndividual pT1 (colon)
OBI:0002228 owl:NamedIndividual pT2 (colon)
OBI:0002229 owl:NamedIndividual pT3 (colon)
OBI:0002230 owl:NamedIndividual pT4a (colon)
OBI:0002231 owl:NamedIndividual pT4b (colon)
OBI:0002232 owl:Class pathologic primary tumor stage for lung according to AJCC 7th edition
OBI:0002233 owl:NamedIndividual pT0 (lung)
OBI:0002234 owl:NamedIndividual pTis (lung)
OBI:0002235 owl:NamedIndividual pT1 (lung)
OBI:0002236 owl:NamedIndividual pT1a (lung)
OBI:0002237 owl:NamedIndividual pT1b (lung)
OBI:0002238 owl:NamedIndividual pT2 (lung)
OBI:0002239 owl:NamedIndividual pT2a (lung)
OBI:0002240 owl:NamedIndividual pT2b (lung)
OBI:0002241 owl:NamedIndividual pT3 (lung)
OBI:0002242 owl:NamedIndividual pT4 (lung)
OBI:0002243 owl:Class pathologic primary tumor stage for kidney according to AJCC 7th edition
OBI:0002244 owl:NamedIndividual pT0 (kidney)
OBI:0002245 owl:NamedIndividual pT1 (kidney)
OBI:0002246 owl:NamedIndividual pT1a (kidney)
OBI:0002247 owl:NamedIndividual pT1b (kidney)
OBI:0002248 owl:NamedIndividual pT2 (kidney)
OBI:0002249 owl:NamedIndividual pT2a (kidney)
OBI:0002250 owl:NamedIndividual pT2b (kidney)
OBI:0002251 owl:NamedIndividual pT3 (kidney)
OBI:0002252 owl:NamedIndividual pT3a (kidney)
OBI:0002253 owl:NamedIndividual pT3b (kidney)
OBI:0002254 owl:NamedIndividual pT3c (kidney)
OBI:0002255 owl:NamedIndividual pT4 (kidney)
OBI:0002256 owl:Class pathologic primary tumor stage for ovary according to AJCC 7th edition
OBI:0002257 owl:NamedIndividual pT0 (ovary)
OBI:0002258 owl:NamedIndividual pT1 (ovary)
OBI:0002259 owl:NamedIndividual pT1a (ovary)
OBI:0002260 owl:NamedIndividual pT1b (ovary)
OBI:0002261 owl:NamedIndividual pT1c (ovary)
OBI:0002262 owl:NamedIndividual pT2 (ovary)
OBI:0002263 owl:NamedIndividual pT2a (ovary)
OBI:0002264 owl:NamedIndividual pT2b (ovary)
OBI:0002265 owl:NamedIndividual pT2c (ovary)
OBI:0002266 owl:NamedIndividual pT3 (ovary)
OBI:0002267 owl:NamedIndividual pT3a (ovary)
OBI:0002268 owl:NamedIndividual pT3b (ovary)
OBI:0002269 owl:NamedIndividual pT3c (ovary)
OBI:0002270 owl:Class pathologic lymph node stage for colon and rectum according to AJCC 7th edition
OBI:0002271 owl:NamedIndividual pN0 (colon)
OBI:0002272 owl:NamedIndividual pN1 (colon)
OBI:0002273 owl:NamedIndividual pN1a (colon)
OBI:0002274 owl:NamedIndividual pN1b (colon)
OBI:0002275 owl:NamedIndividual pN1c (colon)
OBI:0002276 owl:NamedIndividual pN2 (colon)
OBI:0002277 owl:NamedIndividual pN2a (colon)
OBI:0002278 owl:NamedIndividual pN2b (colon)
OBI:0002279 owl:Class pathologic lymph node stage for lung according to AJCC 7th edition
OBI:0002280 owl:NamedIndividual pN0 (lung)
OBI:0002281 owl:NamedIndividual pN1 (lung)
OBI:0002282 owl:NamedIndividual pN2 (lung)
OBI:0002283 owl:NamedIndividual pN3 (lung)
OBI:0002284 owl:Class pathologic lymph node stage for kidney according to AJCC 7th edition
OBI:0002285 owl:NamedIndividual pN0 (kidney)
OBI:0002286 owl:NamedIndividual pN1 (kidney)
OBI:0002287 owl:Class pathologic lymph node stage for ovary according to AJCC 7th edition
OBI:0002288 owl:NamedIndividual pN0 (ovary)
OBI:0002289 owl:NamedIndividual pN1 (ovary)
OBI:0002290 owl:Class pathologic distant metastases stage for colon according to AJCC 7th edition
OBI:0002291 owl:NamedIndividual cM0 (colon)
OBI:0002292 owl:NamedIndividual cM1 (colon)
OBI:0002293 owl:NamedIndividual cM1a (colon)
OBI:0002294 owl:NamedIndividual cM1b (colon)
OBI:0002295 owl:NamedIndividual pM1 (colon)
OBI:0002296 owl:NamedIndividual pM1a (colon)
OBI:0002297 owl:NamedIndividual pM1b (colon)
OBI:0002298 owl:Class pathologic distant metastases stage for lung according to AJCC 7th edition
OBI:0002299 owl:NamedIndividual cM0 (lung)
OBI:0002300 owl:NamedIndividual cM1 (lung)
OBI:0002301 owl:NamedIndividual cM1a (lung)
OBI:0002302 owl:NamedIndividual cM1b (lung)
OBI:0002303 owl:NamedIndividual pM1 (lung)
OBI:0002304 owl:NamedIndividual pM1a (lung)
OBI:0002305 owl:NamedIndividual pM1b (lung)
OBI:0002306 owl:Class pathologic distant metastases stage for kidney according to AJCC 7th edition
OBI:0002307 owl:NamedIndividual cM0 (kidney)
OBI:0002308 owl:NamedIndividual cM1 (kidney)
OBI:0002309 owl:NamedIndividual pM1 (kidney)
OBI:0002310 owl:Class pathologic distant metastases stage for ovary according to AJCC 7th edition
OBI:0002311 owl:NamedIndividual cM0 (ovary)
OBI:0002312 owl:NamedIndividual cM1 (ovary)
OBI:0002313 owl:NamedIndividual pM1 (ovary)
OBI:0002314 owl:Class clinical tumor stage group according to AJCC 7th edition
OBI:0002315 owl:NamedIndividual Occult Carcinoma (AJCC 7th)
OBI:0002316 owl:NamedIndividual Stage 0 (AJCC 7th)
OBI:0002317 owl:NamedIndividual Stage I (AJCC 7th)
OBI:0002318 owl:NamedIndividual Stage IIA (AJCC 7th)
OBI:0002319 owl:NamedIndividual Stage IIB (AJCC 7th)
OBI:0002320 owl:NamedIndividual Stage IIC (AJCC 7th)
OBI:0002321 owl:NamedIndividual Stage IIIA (AJCC 7th)
OBI:0002322 owl:NamedIndividual Stage IIIB (AJCC 7th)
OBI:0002323 owl:NamedIndividual Stage IIIC (AJCC 7th)
OBI:0002324 owl:NamedIndividual Stage IVA (AJCC 7th)
OBI:0002325 owl:NamedIndividual Stage IVB (AJCC 7th)
OBI:0002326 owl:Class International Federation of Gynecology and Obstetrics cervical cancer stage value specification
OBI:0002327 owl:NamedIndividual Stage IA (FIGO)
OBI:0002328 owl:NamedIndividual Stage IA1 (FIGO)
OBI:0002329 owl:NamedIndividual Stage IA2 (FIGO)
OBI:0002330 owl:NamedIndividual Stage IB (FIGO)
OBI:0002331 owl:NamedIndividual Stage IB1 (FIGO)
OBI:0002332 owl:NamedIndividual Stage IB2 (FIGO)
OBI:0002333 owl:NamedIndividual Stage IIA (FIGO)
OBI:0002334 owl:NamedIndividual Stage IIA1 (FIGO)
OBI:0002335 owl:NamedIndividual Stage IIA2 (FIGO)
OBI:0002336 owl:NamedIndividual Stage IIB (FIGO)
OBI:0002337 owl:NamedIndividual Stage IIIA (FIGO)
OBI:0002338 owl:NamedIndividual Stage IIIB (FIGO)
OBI:0002339 owl:NamedIndividual Stage IVA (FIGO)
OBI:0002340 owl:NamedIndividual Stage IVB (FIGO)
OBI:0002341 owl:Class International Federation of Gynecology and Obstetrics ovarian cancer stage value specification
OBI:0002342 owl:NamedIndividual Stage 1 (FIGO)
OBI:0002343 owl:NamedIndividual Stage 1A (FIGO)
OBI:0002344 owl:NamedIndividual Stage 1B (FIGO)
OBI:0002345 owl:NamedIndividual Stage 1C (FIGO)
OBI:0002346 owl:NamedIndividual Stage 2 (FIGO)
OBI:0002347 owl:NamedIndividual Stage 2A (FIGO)
OBI:0002348 owl:NamedIndividual Stage 2B (FIGO)
OBI:0002349 owl:NamedIndividual Stage 2C (FIGO)
OBI:0002350 owl:NamedIndividual Stage 3 (FIGO)
OBI:0002351 owl:NamedIndividual Stage 3A (FIGO)
OBI:0002352 owl:NamedIndividual Stage 3B (FIGO)
OBI:0002353 owl:NamedIndividual Stage 3C (FIGO)
OBI:0002354 owl:NamedIndividual Stage 4 (FIGO)
OBI:0002355 owl:NamedIndividual Stage Unknown (FIGO)
OBI:0002356 owl:Class performance status value specification
OBI:0002357 owl:Class Eastern Cooperative Oncology Group score value specification
OBI:0002358 owl:NamedIndividual 3: symptomatic in bed more than 50% of the day but not bed ridden
OBI:0002359 owl:NamedIndividual 2: symptomatic but in bed less than 50% of the day
OBI:0002360 owl:NamedIndividual 4: bed ridden
OBI:0002361 owl:NamedIndividual 0: asymptomatic
OBI:0002362 owl:NamedIndividual 1: symptomatic but fully ambulatory
OBI:0002363 owl:Class Karnofsky score vaue specification
OBI:0002364 owl:NamedIndividual 100: asymptomatic
OBI:0002365 owl:NamedIndividual 80-90: symptomatic but fully ambulatory
OBI:0002366 owl:NamedIndividual 60-70: symptomatic but in bed less than 50% of the day
OBI:0002367 owl:NamedIndividual 40-50: symptomatic, in bed more than 50% of the day, but not bed ridden
OBI:0002368 owl:Class clinical history of cancer
OBI:0002369 owl:Class clinical history devoid of cancer
OBI:0002370 owl:Class unknown clinical history of cancer
OBI:0002371 owl:Class diagnosis of cancer
OBI:0002372 owl:Class family clinical history of cancer
OBI:0002373 owl:Class aunt clinical history of cancer
OBI:0002374 owl:Class brother clinical history of cancer
OBI:0002375 owl:Class daughter clinical history of cancer
OBI:0002376 owl:Class father clinical history of cancer
OBI:0002377 owl:Class mother clinical history of cancer
OBI:0002378 owl:Class sister clinical history of cancer
OBI:0002379 owl:Class son clinical history of cancer
OBI:0002380 owl:Class uncle clinical history of cancer
OBI:0002381 owl:Class grandmother clinical history of cancer
OBI:0002382 owl:Class grandfather clinical history of cancer
OBI:0002383 owl:Class nephew clinical history of cancer
OBI:0002384 owl:Class niece clinical history of cancer
OBI:0002385 owl:Class diagnosis of infectious disease
OBI:0002386 owl:Class diagnosis of hepatitis B
OBI:0002387 owl:Class diagnosis of hepatitis C
OBI:0002388 owl:Class diagnosis of HIV
OBI:0002389 owl:Class clinical history of repeated HIV assays
OBI:0002390 owl:Class exposure to second hand smoke
OBI:0002391 owl:Class exposure to second hand smoke in household during childhood
OBI:0002392 owl:Class exposure to second hand smoke in current household
OBI:0002393 owl:Class pregnancy history
OBI:0002394 owl:Class number of pregnancies
OBI:0002395 owl:Class number of live births
OBI:0002396 owl:Class age when gave birth to first child
OBI:0002397 owl:Class gynecologic surgery history
OBI:0002398 owl:Class hysterectomy history
OBI:0002399 owl:Class unilateral oophorectomy history
OBI:0002400 owl:Class neither hysterectomy nor oophorectomy history
OBI:0002401 owl:Class hormonal birth control use history
OBI:0002402 owl:Class hormonal birth control former use history
OBI:0002403 owl:Class hormonal birth control current use history
OBI:0002404 owl:Class no hormonal birth control use history
OBI:0002405 owl:Class hormonal replacement therapy history
OBI:0002406 owl:Class delivery form for hormonal replacement therapy
OBI:0002407 owl:Class pill delivery form for hormonal replacement therapy
OBI:0002408 owl:Class patch delivery form for hormonal replacement therapy
OBI:0002409 owl:Class cream delivery form for hormonal replacement therapy
OBI:0002410 owl:Class menopausal status
OBI:0002411 owl:Class indeterminate menopausal status
OBI:0002412 owl:Class premenopausal status
OBI:0002413 owl:Class perimenopausal status
OBI:0002414 owl:Class postmenopausal status
OBI:0002415 owl:Class exposure to environmental and workplace carcinogens history
OBI:0002416 owl:Class exposure to arsenic history
OBI:0002417 owl:Class exposure to asbestos history
OBI:0002418 owl:Class exposure to diesel exhaust history
OBI:0002419 owl:Class exposure to chromium history
OBI:0002420 owl:Class exposure to silica history
OBI:0002421 owl:Class indicator of whether an inclusion criterion was met
OBI:0002422 owl:Class indicator of whether all inclusion criteria were met
OBI:0002423 owl:Class age of majority inclusion criterion
OBI:0002424 owl:Class chemotherapy treatment exclusion criterion
OBI:0002425 owl:Class radiation treatment exclusion criteria
OBI:0002426 owl:Class chemotherapy treatment within the recent past exclusion criterion
OBI:0002427 owl:Class radiation treatment within the recent past exclusion criterion
OBI:0002428 owl:Class BMI range inclusion criterion
OBI:0002429 owl:Class blood transfusion exclusion criterion
OBI:0002430 owl:Class history of metastatic cancer exclusion criterion
OBI:0002431 owl:Class intravenous drug use exclusion criterion
OBI:0002432 owl:Class history of sex with someone with a history of blood borne infection exclusion criterion
OBI:0002433 owl:Class history of sex with someone with a history of intravenous drugs exclusion criterion
OBI:0002434 owl:Class HIV exclusion criterion
OBI:0002435 owl:Class exposure to blood borne infectious disease exclusion criterion
OBI:0002436 owl:Class RNA interactome capture
OBI:0002437 owl:Class widefield microscopy
OBI:0002438 owl:Class nuclear ligation assay
OBI:0002439 owl:Class chromosome conformation capture assay
OBI:0002440 owl:Class Hi-C assay
OBI:0002441 owl:Class physical examination of individual
OBI:0002442 owl:Class hydroxyl-radical footprinting assay
OBI:0002443 owl:Class methidiumpropyl-EDTA-iron(II) footprinting assay
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