Populating an OBD database from scratch
Chris Mungall
[Everything is now in the OBDAPI svn project, https://obo.svn.sourceforge.net/svnroot/obo/obo-database/trunk
is defunct]
obd-create-db.pl [-h <HOST>] -d <DBNAME> [-c <CONF-FILE>] [--reasoner
perl] [OBO_FILE...]
Creates a Pg database with the OBD schema, views and functions
Optionally loads additional sources.
The conf file consits of newline separated resource IDs. You dont need
to specify obo files
on the command line if you use a conf file. See the conf/ directory
for examples
For phenoscape:
cd OBDAPI/
obd-create-db.pl -d obdphenoscape -c conf/obd-phenoscape.conf
Hilmar Lapp
On Sep 18, 2008, at 3:24 PM, Chris Mungall wrote:
> Everything is now in the OBDAPI svn project,https://obo.svn.sourceforge.net/svnroot/obo/obo-database/trunk
> is defunct
I have probably missed that, but does someone have the new OBDAPI svn
URL?
-hilmar
--
===========================================================
: Hilmar Lapp -:- Durham, NC -:- hlapp at duke dot edu :
===========================================================
Chris Mungall
On Sep 18, 2008, at 7:34 PM, Hilmar Lapp wrote:
>
>
> On Sep 18, 2008, at 3:24 PM, Chris Mungall wrote:
>
>> Everything is now in the OBDAPI svn project,https://obo.svn.sourceforge.net/svnroot/obo/obo-database/trunk
>> is defunct
>
>
> I have probably missed that, but does someone have the new OBDAPI svn
> URL?
http://www.bioontology.org/wiki/index.php/OBD:Main_Page#Project_Page
cheers
c