Re: [Obo-phenotype] Chado compatible Schema for Pato
Chris Mungall
The database is called OBD, The Open Biomedical Ontologies Database.
It's developed in our group, not by FlyBase.
You can find details and mail list here:
http://www.bioontology.org/wiki/index.php/OBD:Main_Page#Mail_List
- It's a general purpose ontologies-based annotation database, not
just for PATO based annotations. Having said that, the current
contents of the main OBD instance is phenotype centric
- We're currently housing phenotype annotations from human/OMIM,
Zebrafish, Mouse, fly (soon). We'd love to have Xenopus ones in there
too, if you can make them available
Cheers
Chris
On Sep 22, 2008, at 2:39 PM, Jeff Bowes wrote:
> Hi,
>
> I hope I am posting this request to the right place.
>
> I was talking to Suzanna Lewis at the GMOD meeting in July and she
> said
> that Flybase has been working on a Chado-compatible database schema to
> support PATO-based annotations. My understanding is that this is not
> the same as the phenotypes module that is currently part of Chado.
>
> Can anyone tell me where I could get a copy of this schema?
>
> Thanks very much,
>
> Jeff Bowes
>
>
>
>
> --
> Jeff Bowes M.Sc.
> DBA/Technical Architect, Xenbase
> Department of Biological Sciences
> University of Calgary
> Calgary, Alberta T2N 1N4
> CANADA
> Tel: (403) 220-2824
> Fax: (403) 284-4707
>
>
>
>
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