Simulation box definition

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SAcompuser

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Oct 30, 2020, 4:38:42 PM10/30/20
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So I was wondering how can I define the limits of the simulation space in NWChem? I have looked through the documentation and I haven't been able to find a solid answer myself. For example if I wanted to run a water dimer simulation using HF or DFT, how could I set up the simulation space to be a cubic box or sphere of around 12 Angstrom wide?

Edoardo Aprà

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Oct 30, 2020, 6:28:29 PM10/30/20
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What NWChem module are you referring to? QMD ?

SAcompuser

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Oct 31, 2020, 6:50:07 AM10/31/20
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I am referring to MD. My lab has developed some software that integrates with MD to do free energy simulations, and I need a way to constrain the water dimer to remain inside a box or a sphere. 

Edoardo Aprà

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Nov 1, 2020, 12:07:01 PM11/1/20
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I was not aware that NWChem can perform  HF or DFT Molecular Dynamics simulations with a module other than the Gaussian-Basis-AIMD

Could you provide an input file showing the functionality you are referring to?


SAcompuser

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Nov 1, 2020, 1:21:35 PM11/1/20
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I have attached the input file below
waterdimer_input_file.rtf

Edoardo Aprà

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Nov 1, 2020, 1:29:50 PM11/1/20
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You are right.
I forgot about the old ab-initio MD module. I was not aware it was still functional.
It is not very likely that you will find much help on this topic on this forum.
The Gaussian-Basis-AIMD module is being actively developed, instead.
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