The 3 commands you're most likely to use are
ns3 configure
ns3 build
ns3 run
They're all mentioned in the tutorial.
These are the exact same commands as you would find
in any IDE, which are also shown below in the tutorial.
`ns3 install` in only used in very specific scenarios.
The only reason it exists is to test for
packaging and redistribution.
And it is failing to install because /usr/local is protected.
You would need to run with sudo to install it there.
Since the installation didn't proceed, I guess everything is working as expected.