To measure the link throughput you will have to use the tracing system of ns-3.
e.g. using the MacTx/MacRx trace sources for the p2p net device on routers '0' and '1' you can measure how many packets (hence bytes) are transmitted/received.
Then if you divide it over the simulation time you can have the average throughput of that link.
You could also use Simulator::Schedule and 'monitor' those Tx/Rx bytes per unit of time, so you could observe 'instantaneous' throughput that you can at the end average.
Both are discussed in the list for cases where FlowMonitor is not suitable.
Tracing is explained in the documentation.
Hope that helped.
Regards,
K