Most 3rd party js graphing libraries do allow separate axes with auto-scaling -- which one are you planning to use?
In the past, I've use Dygraph, HighCharts, ChartJS, Plotly, and Google Charts, but there are many others as well...
Since the node-red-dashboard ui_chart node does not currently handle multiple y-axes, you will have to roll your own using the ui_template nodes -- one for the external libs (with the "Added to site <head> section" option enabled), and one to hold the chart css/html/script code. There are some good examples on this group, as well as the node-red group. If you get stuck, feel free to post what you have and we can help you out.
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Steve