NODDI

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kar.kan...@gmail.com

Jun 16

AMICO downsides?

Hi everyone, I'm wondering if there are any downsides I should be aware of when using AMICO for

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AMICO downsides?

Hi everyone, I'm wondering if there are any downsides I should be aware of when using AMICO for

Jun 16

Hui Zhang, Chandana2

11/21/20

Announcing NODDI Matlab Toolbox 1.0.2

Hi Gary, I started analyzing a new project using new NODDI version! At the same time, I took a look

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Announcing NODDI Matlab Toolbox 1.0.2

Hi Gary, I started analyzing a new project using new NODDI version! At the same time, I took a look

11/21/20

Abdulmajeed Alotaibi

10/13/20

NODDI Maps Look Noisy

Dear NODDI experts, I acquired multi-shell diffusion data on a 3T (Philips ingenia) scanner for

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NODDI Maps Look Noisy

Dear NODDI experts, I acquired multi-shell diffusion data on a 3T (Philips ingenia) scanner for

10/13/20

ama...@bu.edu, Hui Zhang2

8/14/20

Create ROI Error

Hi, It looks like you did not understand the instructions from the NODDI toolbox website. I have

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Create ROI Error

Hi, It looks like you did not understand the instructions from the NODDI toolbox website. I have

8/14/20

Karin Kantarovich, … Alessandro Daducci9

5/25/20

error with SaveParamsAsNIfTI

Great, thank you both! Karin

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error with SaveParamsAsNIfTI

Great, thank you both! Karin

5/25/20

Manuel Blesa Cábez, Hui Zhang8

5/24/20

Resume an interrupted run

Ok. If you can't be sure for which subject a run is interrupted and may have resumed the

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Resume an interrupted run

Ok. If you can't be sure for which subject a run is interrupted and may have resumed the

5/24/20

Iain Croall, Hui Zhang11

5/21/20

"Index in position 1 exceeds array bounds" error in batch_fitting.

Hi Iain, Actually, if you don't have access to a large CPU computing cluster, I recommend that

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"Index in position 1 exceeds array bounds" error in batch_fitting.

Hi Iain, Actually, if you don't have access to a large CPU computing cluster, I recommend that

5/21/20

Way Blue, Hui Zhang2

5/20/20

Can NODDI handle single-shell Free water mapping?

Not really, I am afraid. It is important to have multi-shell data with NODDI. Gary On Wed, May 20,

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Can NODDI handle single-shell Free water mapping?

Not really, I am afraid. It is important to have multi-shell data with NODDI. Gary On Wed, May 20,

5/20/20

Blake Neyland, … Hui Zhang5

5/15/20

Error with batch_fitting

Hi all, Jan's diagnosis was spot on. This was never an issue for the earlier Matlab versions I

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Error with batch_fitting

Hi all, Jan's diagnosis was spot on. This was never an issue for the earlier Matlab versions I

5/15/20

Crystal Franklin, Hui Zhang2

4/25/20

MException Message

Hi Crystal, This message can happen for two reasons: 1) the b-values of non-diffusion-weighted

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MException Message

Hi Crystal, This message can happen for two reasons: 1) the b-values of non-diffusion-weighted

4/25/20

Ande Bagdasarian, Hui Zhang4

3/10/20

Modify Parallel Diffusivity in a voxel-by-voxel basis for stroke modeling

You will have to write some code to select the right fixed diffusivity value per voxel and then fit

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Modify Parallel Diffusivity in a voxel-by-voxel basis for stroke modeling

You will have to write some code to select the right fixed diffusivity value per voxel and then fit

3/10/20

Manuel Blesa Cábez, Hui Zhang3

2/28/20

Modify parallel diffusivity

Hi, Thanks for your answer! I prefer to change the default values permanently, because we only work

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Modify parallel diffusivity

Hi, Thanks for your answer! I prefer to change the default values permanently, because we only work

2/28/20

11/5/19

Error with CreateROI and using subsref

Hi Gary and All, We had a lab member run into a new error with inputing a mask into the toolbox.

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Error with CreateROI and using subsref

Hi Gary and All, We had a lab member run into a new error with inputing a mask into the toolbox.

11/5/19

Patrick McCunn, Hui Zhang5

10/19/19

Axon diameter and glial cells in rodents

Thanks Dr. Zhang Your help is always appreciated! Patrick On Thursday, October 17, 2019 at 1:20:02 PM

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Axon diameter and glial cells in rodents

Thanks Dr. Zhang Your help is always appreciated! Patrick On Thursday, October 17, 2019 at 1:20:02 PM

10/19/19

Lucy, Hui Zhang2

10/15/19

Error in batch_fitting_single (line 71)

Hi Lucy, This is the same issue as reported here: https://groups.google.com/d/msg/noddi/-Jsyu_CEnV8/

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Error in batch_fitting_single (line 71)

Hi Lucy, This is the same issue as reported here: https://groups.google.com/d/msg/noddi/-Jsyu_CEnV8/

10/15/19

Blake Neyland, Hui Zhang2

10/15/19

Error in batch_fitting with GridSearchRician

Hi Blake, The issue is that in your bval file, b=0 values are non-zero. If you take a look at the

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Error in batch_fitting with GridSearchRician

Hi Blake, The issue is that in your bval file, b=0 values are non-zero. If you take a look at the

10/15/19

Beth Hutchinson, … Hui Zhang4

3/27/19

Hi Ajay, When the noise level is very low, the Rician noise model becomes the Gaussian noise model.

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Hi Ajay, When the noise level is very low, the Rician noise model becomes the Gaussian noise model.

3/27/19

3/20/19

Importing files to NODDI

Hi NODDI Experts, I just wanted to follow up with my questions below to see if anyone know the

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Importing files to NODDI

Hi NODDI Experts, I just wanted to follow up with my questions below to see if anyone know the

3/20/19

tuk3...@temple.edu, … Hui Zhang4

12/10/18

Good to know. Gary On Sat, Dec 8, 2018 at 10:52 PM Darien Aunapu <darien.aunapu@temple.edu>

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Good to know. Gary On Sat, Dec 8, 2018 at 10:52 PM Darien Aunapu <darien.aunapu@temple.edu>

12/10/18

mze...@stanford.edu

10/22/18

Different signal levels on the b0 images

Hi ... processing some NODDI data acquired as back-to-back acquisitions, the first at b=2500 and the

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Different signal levels on the b0 images

Hi ... processing some NODDI data acquired as back-to-back acquisitions, the first at b=2500 and the

10/22/18

10/4/18

Bingham model error using 'BinghamStickTortIsoV_B0'

Hi Gary, Thank you for your generosity of sharing the 'NODDI Toolbox' for the community! I

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Bingham model error using 'BinghamStickTortIsoV_B0'

Hi Gary, Thank you for your generosity of sharing the 'NODDI Toolbox' for the community! I

10/4/18

Ioannis Mourginakis, … Sean Ma4

9/28/18

How to speed up noddi

To my understanding, no, it just changes the amount of voxels the program processes per batch. Don

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How to speed up noddi

To my understanding, no, it just changes the amount of voxels the program processes per batch. Don

9/28/18

Manish Amin, … Hui Zhang18

9/28/18

fICVF is always 1?

Hi Manish, I don't believe I have received a copy of your tutorial. Gary On Wed, Sep 12, 2018 at

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fICVF is always 1?

Hi Manish, I don't believe I have received a copy of your tutorial. Gary On Wed, Sep 12, 2018 at

9/28/18

Foxet Foxet, Hui Zhang2

9/25/18

Could data with multple b values with totally different bvecs use noddi?

Theoretically this is possible. Gary On Tue, Sep 25, 2018 at 3:12 PM Foxet Foxet <foxetfoxet@gmail

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Could data with multple b values with totally different bvecs use noddi?

Theoretically this is possible. Gary On Tue, Sep 25, 2018 at 3:12 PM Foxet Foxet <foxetfoxet@gmail

9/25/18

Gary, 张晓星4

9/13/18

A tutorial on exploring DWI data with FSLview

Dear Gary yes，l have ，but the result is still not ideal，I have email you ，but you do not reply to me

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A tutorial on exploring DWI data with FSLview

Dear Gary yes，l have ，but the result is still not ideal，I have email you ，but you do not reply to me

9/13/18

Marcelo Febo, … Ioannis Mourginakis4

9/12/18

Invalid MEX-file error

We have had the same problem and have figured out how to resolve it for anybody still wondering. You

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Invalid MEX-file error

We have had the same problem and have figured out how to resolve it for anybody still wondering. You

9/12/18

Ioannis Mourginakis, Hui Zhang2

9/12/18

batch_fitting_single and batch_fitting functions CUSTOM TIMER DOWNLOAD

Thanks. Gary On Wed, Sep 12, 2018 at 6:36 PM Ioannis Mourginakis <ioannis.mourginakis@gmail.com

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batch_fitting_single and batch_fitting functions CUSTOM TIMER DOWNLOAD

Thanks. Gary On Wed, Sep 12, 2018 at 6:36 PM Ioannis Mourginakis <ioannis.mourginakis@gmail.com

9/12/18

hastotes, Hui Zhang2

7/2/18

NODDI in VBQ Analysis

Hi, There isn't a simple answer to your question. Having voxels with non-zero error code in the

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NODDI in VBQ Analysis

Hi, There isn't a simple answer to your question. Having voxels with non-zero error code in the

7/2/18

Rakshit Dadarwal, Hui Zhang7

6/25/18

NODDI fitting model for ex-vivo brain data

Dear Gary, Any suggestion on results that I have shown above. regards rakshit On Tue, May 22, 2018 at

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NODDI fitting model for ex-vivo brain data

Dear Gary, Any suggestion on results that I have shown above. regards rakshit On Tue, May 22, 2018 at

6/25/18

Kenichi TABEI, Hui Zhang4

6/16/18

batch_fitting_single error

Have you had a chance to go through the tutorial on how to explore DWI data? If you have, can you

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batch_fitting_single error

Have you had a chance to go through the tutorial on how to explore DWI data? If you have, can you

6/16/18

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