NiPy Users - Google Groups

Groups

1–24 of 531

0 selected

Dan, Satrajit Ghosh10

10/16/14

nipype - sometimes hangs on MatlabCommands

OK, thanks for the tips Satra. On Wed, Oct 15, 2014 at 1:24 PM, Satrajit Ghosh <sa...@mit.edu>

unread,

nipype - sometimes hangs on MatlabCommands

OK, thanks for the tips Satra. On Wed, Oct 15, 2014 at 1:24 PM, Satrajit Ghosh <sa...@mit.edu>

10/16/14

parnesh...@gmail.com, Satrajit Ghosh3

9/23/14

Multiple versions of SPM

Ah I see, I was setting the paths in matlab. Thanks. On Wednesday, September 24, 2014 12:09:14 AM UTC

unread,

Multiple versions of SPM

Ah I see, I was setting the paths in matlab. Thanks. On Wednesday, September 24, 2014 12:09:14 AM UTC

9/23/14

Helmet Karim, Satrajit Ghosh7

7/22/14

NewSegment and Workflows

Satra, So I resolved the issue. So when I was defining NewSegment I was doing the following: from

unread,

NewSegment and Workflows

Satra, So I resolved the issue. So when I was defining NewSegment I was doing the following: from

7/22/14

Horea Christian, Satrajit Ghosh4

7/22/14

SPM Dartel Tutorial - did it work? what now?

So where does the data come from? How can I check whether I am seeing what I am supposed to be seeing

unread,

SPM Dartel Tutorial - did it work? what now?

So where does the data come from? How can I check whether I am seeing what I am supposed to be seeing

7/22/14

6/16/14

affine registration

Hi all, I would like to use the spm_affreg function in Nipype. Is it possible? I was looking this

unread,

affine registration

Hi all, I would like to use the spm_affreg function in Nipype. Is it possible? I was looking this

6/16/14

Jason, Thomas Nickson3

5/28/14

java NullPointerException when running SPM Level1Design

Thanks, yes I figured it was probably Matlab's fault. The -nojvm option didn't work because

unread,

java NullPointerException when running SPM Level1Design

Thanks, yes I figured it was probably Matlab's fault. The -nojvm option didn't work because

5/28/14

Zachary Greenberg

5/15/14

SPM SliceTiming Error: Item 'Session', field 'val': Number of matching files (1) less than required2

I'm getting this error running nipype on an ubuntu vm setup. My code looks like this: import os

unread,

SPM SliceTiming Error: Item 'Session', field 'val': Number of matching files (1) less than required2

I'm getting this error running nipype on an ubuntu vm setup. My code looks like this: import os

5/15/14

thomas.nickson, Satrajit Ghosh3

3/18/14

Normalising subject to MNI causes differing sized outputs

Hey sorry I missed that I posted the wrong files. I'll try again! https://gist.github.com/

unread,

Normalising subject to MNI causes differing sized outputs

Hey sorry I missed that I posted the wrong files. I'll try again! https://gist.github.com/

3/18/14

thomas.nickson, Satrajit Ghosh2

3/15/14

Normalise's source and template are not mutually exclusive from parameter_file

hi tom, doesn't look like a bug on master. the following snippet ran fine for me. ``` import

unread,

Normalise's source and template are not mutually exclusive from parameter_file

hi tom, doesn't look like a bug on master. the following snippet ran fine for me. ``` import

3/15/14

thomas.nickson, … Satrajit Ghosh7

3/10/14

Convert between nii.gz and nii

hi tom, nothing that does this automatically. a few options: 1. write a generic function that handles

unread,

Convert between nii.gz and nii

hi tom, nothing that does this automatically. a few options: 1. write a generic function that handles

3/10/14

René Küttner, Satrajit Ghosh5

1/1/14

SPM standalone (mcr) version as a default

Hi satra, I created the pull request at: https://github.com/nipy/nipype/pull/759 cheers, René

unread,

SPM standalone (mcr) version as a default

Hi satra, I created the pull request at: https://github.com/nipy/nipype/pull/759 cheers, René

1/1/14

Stephan Howwol, Satrajit Ghosh2

12/28/13

spm unwarp in niypype

hi stephan, some folks were going to add the fieldmap based unwarping. if you could look into

unread,

spm unwarp in niypype

hi stephan, some folks were going to add the fieldmap based unwarping. if you could look into

12/28/13

Pankaj Singh, Michael2

12/7/13

[Nipype] ApplyDeformations : not identifying def parameter file

Hi Pankaj, I think what you are looking for is ApplyTransform in spm.utils On Friday, December 6,

unread,

[Nipype] ApplyDeformations : not identifying def parameter file

Hi Pankaj, I think what you are looking for is ApplyTransform in spm.utils On Friday, December 6,

12/7/13

Pankaj Singh, cindee6

11/6/13

No support for spm ecat import and imcalc ?

This is quick, but hopefully helps https://gist.github.com/cindeem/7347843 --C On Wed, Nov 6, 2013 at

unread,

No support for spm ecat import and imcalc ?

This is quick, but hopefully helps https://gist.github.com/cindeem/7347843 --C On Wed, Nov 6, 2013 at

11/6/13

Michael, Satrajit Ghosh3

10/13/13

Applying SPM deformation field: a simpler way than "applying inverse of inverse transform" ?

i think that should be adjusted. cheers, satra On Fri, Oct 11, 2013 at 2:42 PM, Michael <mdayan.

unread,

Applying SPM deformation field: a simpler way than "applying inverse of inverse transform" ?

i think that should be adjusted. cheers, satra On Fri, Oct 11, 2013 at 2:42 PM, Michael <mdayan.

10/13/13

Elena Molina, Satrajit Ghosh6

10/9/13

ERROR: SPM standalone

Thank you so much!! 2013/10/9 Satrajit Ghosh <sa...@mit.edu> hi elena, these changes are now

unread,

ERROR: SPM standalone

Thank you so much!! 2013/10/9 Satrajit Ghosh <sa...@mit.edu> hi elena, these changes are now

10/9/13

Henry Chase, … Satrajit Ghosh3

9/9/13

generalized psychophysiological interaction (gPPI) analysis for nipype

hi henry and eveline, indeed it would be good to include such workflows. at present we don't have

unread,

generalized psychophysiological interaction (gPPI) analysis for nipype

hi henry and eveline, indeed it would be good to include such workflows. at present we don't have

9/9/13

Juliane, … Erik Kastman11

3/24/14

[nipype] spm fieldmap

Sorry to drag up an old post, but did these SPM Fieldmap - Calculate / Apply VDM interfaces make it

unread,

[nipype] spm fieldmap

Sorry to drag up an old post, but did these SPM Fieldmap - Calculate / Apply VDM interfaces make it

3/24/14

Dylan Nielson, … Ryan Sherrock7

8/15/13

nipype can't find spm even though it on the matlab path

The out put of that shows that SPM is in the path I do believe, but it still isnt working. It is

unread,

nipype can't find spm even though it on the matlab path

The out put of that shows that SPM is in the path I do believe, but it still isnt working. It is

8/15/13

6/27/13

Post-doc position available in Jülich/Düsseldorf

FYI: Post-doc position available in Jülich/Düsseldorf Connectivity endophenotypes of brain disease

unread,

Post-doc position available in Jülich/Düsseldorf

FYI: Post-doc position available in Jülich/Düsseldorf Connectivity endophenotypes of brain disease

6/27/13

6/27/13

Two PhD positions available in Jülich/Düsseldorf

FYI: Two PhD positions available in Jülich/Düsseldorf The lab: The Brain Network Modelling Group is

unread,

Two PhD positions available in Jülich/Düsseldorf

FYI: Two PhD positions available in Jülich/Düsseldorf The lab: The Brain Network Modelling Group is

6/27/13

David....@olfac.univ-lyon1.fr

5/28/13

spm.Realign() in Nipype 0.8 version

Dear all, I am new to Nipype, I have been using it for a few weeks now, very convenient! I have

unread,

spm.Realign() in Nipype 0.8 version

Dear all, I am new to Nipype, I have been using it for a few weeks now, very convenient! I have

5/28/13

Daniel Geisler, Satrajit Ghosh4

2/5/13

[nipype] Use SPM standalone (MCR)

hi daniel, Thanks so much for your attempt to fix the MCR thing. I added some more lines of code to

unread,

[nipype] Use SPM standalone (MCR)

hi daniel, Thanks so much for your attempt to fix the MCR thing. I added some more lines of code to

2/5/13

Dan, Chris Filo Gorgolewski7

7/26/12

[NiPype] spm_normalise error

Works now. Thanks! On an unrelated note, is there a better way to download things from git? Up to now

unread,

[NiPype] spm_normalise error

Works now. Thanks! On an unrelated note, is there a better way to download things from git? Up to now

7/26/12

Search

Clear search

Close search

Google apps

Main menu