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Дмитро Бєлєвцов
,
Chris Filo Gorgolewski
3
10/27/14
[nipype] custom location for temporary files
Wow, neat system. Thanks On Sunday, October 26, 2014 7:23:06 PM UTC+1, Chris Filo Gorgolewski wrote:
unread,
nipype
workflow
[nipype] custom location for temporary files
Wow, neat system. Thanks On Sunday, October 26, 2014 7:23:06 PM UTC+1, Chris Filo Gorgolewski wrote:
10/27/14
Dan
,
Satrajit Ghosh
10
10/16/14
nipype - sometimes hangs on MatlabCommands
OK, thanks for the tips Satra. On Wed, Oct 15, 2014 at 1:24 PM, Satrajit Ghosh <sa...@mit.edu>
unread,
error
nipype
spm
nipype - sometimes hangs on MatlabCommands
OK, thanks for the tips Satra. On Wed, Oct 15, 2014 at 1:24 PM, Satrajit Ghosh <sa...@mit.edu>
10/16/14
Дмитро Бєлєвцов
, …
Chris Filo Gorgolewski
7
10/8/14
Machine learning capabilities and the Function Interface
Oh, thanks, I see now. The problem was that I was defining a class inside the function definition,
unread,
nipype
workflows
Machine learning capabilities and the Function Interface
Oh, thanks, I see now. The problem was that I was defining a class inside the function definition,
10/8/14
T. Dalton Combs
10/7/14
FSL FLAMEO tstats
One of the outputs of FLAMEO is 'tstats' what do the values in this image mean? The appear to
unread,
FLAMEO
fsl
nipype
FSL FLAMEO tstats
One of the outputs of FLAMEO is 'tstats' what do the values in this image mean? The appear to
10/7/14
CL
,
Satrajit Ghosh
5
10/16/14
FSL & Nipype IOError
Thank you for the assistance, I determined yesterday that iPython and Spyder were using a different
unread,
environmental
fsl
issue
neurodebian
nipype
FSL & Nipype IOError
Thank you for the assistance, I determined yesterday that iPython and Spyder were using a different
10/16/14
parnesh...@gmail.com
,
Satrajit Ghosh
3
9/23/14
nipype and fsl_sub
Thanks. I found out that this particular cluster had a modified fsl_sub for PBS/Torque that did not
unread,
cluster
fsl
fsl_sub
nipype
nipype and fsl_sub
Thanks. I found out that this particular cluster had a modified fsl_sub for PBS/Torque that did not
9/23/14
thomas.nickson
,
Satrajit Ghosh
3
9/24/14
Mapnode over multiple values for DCM converison
Hi Satra, I managed to solve this by using a synchronised iterable list in the identity interface!
unread,
MapNode
datagrabber
datasink
nifti
nipype
Mapnode over multiple values for DCM converison
Hi Satra, I managed to solve this by using a synchronised iterable list in the identity interface!
9/24/14
Cristian Vazquez
,
Satrajit Ghosh
2
9/9/14
Nipype and ssh
hi cristian, you need to read the ipython help on how to setup ipython over ssh. http://ipython.org/
unread,
nipype
plugin
ssh
Nipype and ssh
hi cristian, you need to read the ipython help on how to setup ipython over ssh. http://ipython.org/
9/9/14
Helmet Karim
,
Satrajit Ghosh
7
7/22/14
NewSegment and Workflows
Satra, So I resolved the issue. So when I was defining NewSegment I was doing the following: from
unread,
NewSegment
nipype
outputfiles
spm
workflow
NewSegment and Workflows
Satra, So I resolved the issue. So when I was defining NewSegment I was doing the following: from
7/22/14
Arman Eshaghi
,
Satrajit Ghosh
2
7/20/14
[NiPype] Python 3 compatibility
hi arman, the primary piece, moving away from traits, is the work being done here: https://github.com
unread,
nipype
[NiPype] Python 3 compatibility
hi arman, the primary piece, moving away from traits, is the work being done here: https://github.com
7/20/14
Horea Christian
,
Satrajit Ghosh
4
7/22/14
SPM Dartel Tutorial - did it work? what now?
So where does the data come from? How can I check whether I am seeing what I am supposed to be seeing
unread,
Tutorial
nipype
spm
SPM Dartel Tutorial - did it work? what now?
So where does the data come from? How can I check whether I am seeing what I am supposed to be seeing
7/22/14
Nicolas Toussaint
, …
Arman Eshaghi
7
7/11/14
Nipype with SGEGraph plugin: MapNode parallelization
So for your information it seems that during an SGE execution, the while loop over '
unread,
MapNode
SGEGraph
nipype
pipeline
Nipype with SGEGraph plugin: MapNode parallelization
So for your information it seems that during an SGE execution, the while loop over '
7/11/14
Yasin Yazıcı
,
Satrajit Ghosh
2
7/9/14
out_file error
hi yasin, # fsl ChangeDataType fsl_cdt = pe.Node(interface = fsl.ChangeDataType(), name = '
unread,
error
fsl
nipype
rename
out_file error
hi yasin, # fsl ChangeDataType fsl_cdt = pe.Node(interface = fsl.ChangeDataType(), name = '
7/9/14
Yasin Yazıcı
,
Satrajit Ghosh
5
7/16/14
Comman Line Interface
hi yasin, something like this could use the new traits metadata. changes made are bold faced. from
unread,
CommandLine
interface
nipype
Comman Line Interface
hi yasin, something like this could use the new traits metadata. changes made are bold faced. from
7/16/14
Yasin Yazıcı
, …
Augustine Koh
7
7/7/14
Matlab Interface does not proceed
MatlabCommand codes are running now after the server backup. So it was about server. Regards Yasin
unread,
interface
matlab
nipype
Matlab Interface does not proceed
MatlabCommand codes are running now after the server backup. So it was about server. Regards Yasin
7/7/14
Horea Christian
,
Michael Waskom
2
7/5/14
Level2 Tutorials (Famous Faces)
Hi Horea, As far as I can tell (I don't use SPM), the original Famous Faces tutorial just covers
unread,
Tutorial
nipype
Level2 Tutorials (Famous Faces)
Hi Horea, As far as I can tell (I don't use SPM), the original Famous Faces tutorial just covers
7/5/14
Michael
, …
Satrajit Ghosh
6
7/7/14
Error when testing nipype installation
in current master there is a doctest. https://github.com/nipy/nipype/blob/master/nipype/interfaces/
unread,
dcm2nii
error
nipype
Error when testing nipype installation
in current master there is a doctest. https://github.com/nipy/nipype/blob/master/nipype/interfaces/
7/7/14
thomas.nickson
,
Satrajit Ghosh
3
6/19/14
Group ICA Errors
hi tom, could you please point out where nipype does this? this is the cmdline generated by MELODIC
unread,
error
ica
nipype
Group ICA Errors
hi tom, could you please point out where nipype does this? this is the cmdline generated by MELODIC
6/19/14
Elena Molina
6/16/14
affine registration
Hi all, I would like to use the spm_affreg function in Nipype. Is it possible? I was looking this
unread,
nipype
registration
spm
affine registration
Hi all, I would like to use the spm_affreg function in Nipype. Is it possible? I was looking this
6/16/14
thomas.nickson
, …
Arman Eshaghi
3
6/16/14
Motion regressors
or to wrap it as a Nipype interface on yourself and perhaps contribute to the whole project: http://
unread,
fsl
motioncorrection
nipype
Motion regressors
or to wrap it as a Nipype interface on yourself and perhaps contribute to the whole project: http://
6/16/14
at.s...@gmail.com
,
thomas.nickson
2
6/16/14
Problems with Nipype JoinNode output (getting list of lists)
I'm not sure that I fully get what you're trying to do but I had a similar problem where I
unread,
JoinNode
itersource
nipype
Problems with Nipype JoinNode output (getting list of lists)
I'm not sure that I fully get what you're trying to do but I had a similar problem where I
6/16/14
thomas.nickson
3
6/11/14
Strange errors when deploying on condor.
Oh dear, it was an error in my code! On Wednesday, June 11, 2014 1:10:13 PM UTC+1, thomas.nickson
unread,
condor
error
nipype
plugin
Strange errors when deploying on condor.
Oh dear, it was an error in my code! On Wednesday, June 11, 2014 1:10:13 PM UTC+1, thomas.nickson
6/11/14
Augustine Koh
2
6/7/14
Remove_node_directories option on config file
I attempted to try to set this option via two ways as suggested on the documentation - 1. setting the
unread,
nipype
workflows
Remove_node_directories option on config file
I attempted to try to set this option via two ways as suggested on the documentation - 1. setting the
6/7/14
Arman Eshaghi
,
Michael Waskom
3
6/7/14
DataFinder and IdentityInterface
Thanks Michael. This notebook is exactly what I was looking for. All the best, Arman On Sat, Jun 7,
unread,
IdentityInterface
datafinder
nipype
DataFinder and IdentityInterface
Thanks Michael. This notebook is exactly what I was looking for. All the best, Arman On Sat, Jun 7,
6/7/14
Oscar Esteban
,
Satrajit Ghosh
6
7/24/14
Workflow iterating on internal workflow
hi oscar, do send a PR. this comparative tool is going to be quite useful for persistent evaluations.
unread,
feature-request
nipype
workflow
Workflow iterating on internal workflow
hi oscar, do send a PR. this comparative tool is going to be quite useful for persistent evaluations.
7/24/14
Augustine Koh
6/2/14
Wrapping custom MATLAB Script --- HELP!!!
Dear All Nipype users and developers, We've been trying to wrap custom MATLAB script for a while
unread,
interface
matlab
nipype
Wrapping custom MATLAB Script --- HELP!!!
Dear All Nipype users and developers, We've been trying to wrap custom MATLAB script for a while
6/2/14
Augustine Koh
6/2/14
Installation test with Nipype installed on a Ubuntu system
Dear All, Recently I managed to install Nipype on my lab's Workstation running on Ubuntu 12.04
unread,
install
matlab
nipype
Installation test with Nipype installed on a Ubuntu system
Dear All, Recently I managed to install Nipype on my lab's Workstation running on Ubuntu 12.04
6/2/14
Johannes Bathelt
, …
Erik Ziegler
9
9/9/14
Problems with dMRI_connectivity_advanced
Hey, That's a bit weird indeed. The parcellate interface definitely does have an ROI file output.
unread,
error
nipype
Problems with dMRI_connectivity_advanced
Hey, That's a bit weird indeed. The parcellate interface definitely does have an ROI file output.
9/9/14
Arman Eshaghi
,
Augustine Koh
3
6/6/14
Passing complex outputs to the next node
Thanks for your response. I will respond to my own question for posterity: Since Atropos provides a
unread,
ants
atropos
interface
nipype
workflow
Passing complex outputs to the next node
Thanks for your response. I will respond to my own question for posterity: Since Atropos provides a
6/6/14
thomas.nickson
,
Satrajit Ghosh
3
5/30/14
split Joinnode outputs list of lists
I have the split function in the join node so that I can now access the splits with out1 or out2 etc
unread,
JoinNode
nipype
split
split Joinnode outputs list of lists
I have the split function in the join node so that I can now access the splits with out1 or out2 etc
5/30/14