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Dan, Satrajit Ghosh10

10/16/14

nipype - sometimes hangs on MatlabCommands

OK, thanks for the tips Satra. On Wed, Oct 15, 2014 at 1:24 PM, Satrajit Ghosh <sa...@mit.edu>

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nipype - sometimes hangs on MatlabCommands

OK, thanks for the tips Satra. On Wed, Oct 15, 2014 at 1:24 PM, Satrajit Ghosh <sa...@mit.edu>

10/16/14

Yasin Yazıcı, Satrajit Ghosh2

7/9/14

hi yasin, # fsl ChangeDataType fsl_cdt = pe.Node(interface = fsl.ChangeDataType(), name = '

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hi yasin, # fsl ChangeDataType fsl_cdt = pe.Node(interface = fsl.ChangeDataType(), name = '

7/9/14

Michael, … Satrajit Ghosh6

7/7/14

Error when testing nipype installation

in current master there is a doctest. https://github.com/nipy/nipype/blob/master/nipype/interfaces/

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Error when testing nipype installation

in current master there is a doctest. https://github.com/nipy/nipype/blob/master/nipype/interfaces/

7/7/14

thomas.nickson, Satrajit Ghosh3

6/19/14

Group ICA Errors

hi tom, could you please point out where nipype does this? this is the cmdline generated by MELODIC

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Group ICA Errors

hi tom, could you please point out where nipype does this? this is the cmdline generated by MELODIC

6/19/14

thomas.nickson3

6/11/14

Strange errors when deploying on condor.

Oh dear, it was an error in my code! On Wednesday, June 11, 2014 1:10:13 PM UTC+1, thomas.nickson

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Strange errors when deploying on condor.

Oh dear, it was an error in my code! On Wednesday, June 11, 2014 1:10:13 PM UTC+1, thomas.nickson

6/11/14

Johannes Bathelt, … Erik Ziegler9

9/9/14

Problems with dMRI_connectivity_advanced

Hey, That's a bit weird indeed. The parcellate interface definitely does have an ROI file output.

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Problems with dMRI_connectivity_advanced

Hey, That's a bit weird indeed. The parcellate interface definitely does have an ROI file output.

9/9/14

thomas.nickson, Satrajit Ghosh5

5/23/14

JoinNode fails with AttributeError: 'module' object has no attribute 'has_path'

Excellent, I upgraded to 1.6 and it works! I'll open an issue. Thanks, Tom On Fri, May 23, 2014

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JoinNode fails with AttributeError: 'module' object has no attribute 'has_path'

Excellent, I upgraded to 1.6 and it works! I'll open an issue. Thanks, Tom On Fri, May 23, 2014

5/23/14

Jason, Thomas Nickson3

5/28/14

java NullPointerException when running SPM Level1Design

Thanks, yes I figured it was probably Matlab's fault. The -nojvm option didn't work because

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java NullPointerException when running SPM Level1Design

Thanks, yes I figured it was probably Matlab's fault. The -nojvm option didn't work because

5/28/14

Dave W, … Johnson, Hans J5

5/6/14

Sub-workflows and execution directory

Dave, I will try to look at it. There is not sufficient information for Satra to be able to help you

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Sub-workflows and execution directory

Dave, I will try to look at it. There is not sufficient information for Satra to be able to help you

5/6/14

thomas.nickson, Satrajit Ghosh2

3/15/14

Normalise's source and template are not mutually exclusive from parameter_file

hi tom, doesn't look like a bug on master. the following snippet ran fine for me. ``` import

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Normalise's source and template are not mutually exclusive from parameter_file

hi tom, doesn't look like a bug on master. the following snippet ran fine for me. ``` import

3/15/14

Cris Lanting, Satrajit Ghosh3

2/21/14

error with multiple but not single runs - rsfmri_fsl_compcorr

Thanks Satra - a good nudge in the right direction! http://nipy.org/nipype/users/

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error with multiple but not single runs - rsfmri_fsl_compcorr

Thanks Satra - a good nudge in the right direction! http://nipy.org/nipype/users/

2/21/14

thomas.nickson, Chris Filo Gorgolewski2

2/12/14

Error checking in NiPype

When you set stop_onfirst_crash (http://nipy.org/nipype/users/config_file.html#execution) to true you

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Error checking in NiPype

When you set stop_onfirst_crash (http://nipy.org/nipype/users/config_file.html#execution) to true you

2/12/14

thomas.nickson, … Chris Filo Gorgolewski9

6/16/14

OSError: [Errno 7] Argument list too long

This fixed have been merged into master a while ago. Please try it out. Best, Chris On Mon, Jun 16,

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OSError: [Errno 7] Argument list too long

This fixed have been merged into master a while ago. Please try it out. Best, Chris On Mon, Jun 16,

6/16/14

thomas.nickson, … Satrajit Ghosh14

2/22/14

Trait errors on dcm2nii

On Sat, Feb 22, 2014 at 2:50 AM, Christopher Bell <christoph...@gmail.com> wrote: What

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Trait errors on dcm2nii

On Sat, Feb 22, 2014 at 2:50 AM, Christopher Bell <christoph...@gmail.com> wrote: What

2/22/14

Michael, Satrajit Ghosh4

12/7/13

NiPype hanging when too many subjects

hi mike, i just sent a pull request. can you check it out. this should handle it. https://github.com/

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NiPype hanging when too many subjects

hi mike, i just sent a pull request. can you check it out. this should handle it. https://github.com/

12/7/13

Michael, … Chris Filo Gorgolewski8

10/21/13

AFNI automask broken (urgent help would be great)

Yes works fine. Sorry got entangled in between git commands and virtual envs On Saturday, October 19,

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AFNI automask broken (urgent help would be great)

Yes works fine. Sorry got entangled in between git commands and virtual envs On Saturday, October 19,

10/21/13

Dylan Nielson, Satrajit Ghosh2

7/1/13

Problem running dmri fsl dti example

hi dylan, add (assuming that a lexical sort is indeed what you want for your filenames): datasource.

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Problem running dmri fsl dti example

hi dylan, add (assuming that a lexical sort is indeed what you want for your filenames): datasource.

7/1/13

Michael, Satrajit Ghosh5

4/18/13

Test after installation returns errors

Many thanks for the impressively swift reply Satra On Thursday, April 18, 2013 2:57:33 PM UTC-4,

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Test after installation returns errors

Many thanks for the impressively swift reply Satra On Thursday, April 18, 2013 2:57:33 PM UTC-4,

4/18/13

Fred Loney, … Chris Filo Gorgolewski4

6/1/13

Long working directory names

Still working on it (see https://github.com/nipy/nipype/pull/535) will be there soon! On Thu, May 2,

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Long working directory names

Still working on it (see https://github.com/nipy/nipype/pull/535) will be there soon! On Thu, May 2,

6/1/13

Dan, Chris Filo Gorgolewski7

7/26/12

[NiPype] spm_normalise error

Works now. Thanks! On an unrelated note, is there a better way to download things from git? Up to now

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[NiPype] spm_normalise error

Works now. Thanks! On an unrelated note, is there a better way to download things from git? Up to now

7/26/12

Dan, Satrajit Ghosh2

7/24/12

[NiPype] MRIConvert errors

hi dan, could you please also provide the inputs for the interface/node? i suspect you are doing some

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[NiPype] MRIConvert errors

hi dan, could you please also provide the inputs for the interface/node? i suspect you are doing some

7/24/12

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