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Hi Chris,Please find the installation output in the txt file below. Thanks a lot for your help!Best,Qianyu
Hi Chris,Please find the info below:> sessionInfo()R version 4.3.2 (2023-10-31)Platform: x86_64-redhat-linux-gnu (64-bit)Running under: Red Hat Enterprise Linux 8.9 (Ootpa)Matrix products: defaultBLAS/LAPACK: /usr/lib64/libopenblaso-r0.3.15.so; LAPACK version 3.9.0locale:[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8[7] LC_PAPER=en_US.UTF-8 LC_NAME=C[9] LC_ADDRESS=C LC_TELEPHONE=C[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=Ctime zone: America/New_Yorktzcode source: system (glibc)attached base packages:[1] stats graphics grDevices utils datasets methods baseother attached packages:[1] nimble_1.1.0loaded via a namespace (and not attached):[1] compiler_4.3.2 R6_2.5.1 magrittr_2.0.3[4] parallel_4.3.2 igraph_1.3.1 coda_0.19-4.1[7] grid_4.3.2 numDeriv_2016.8-1.1 pkgconfig_2.0.3[10] pracma_2.4.4 lattice_0.21-9Thanks!QianyuOn Feb 13, 2024, at 8:45 AM, Chris Paciorek <paci...@stat.berkeley.edu> wrote:sessionInfo()
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Error in { : task 2 failed - "Failed to create the shared library.
g++ -std=gnu++17 -I"/home/ma21d501/R-4.4.0/include" -DNDEBUG -DR_NO_REMAP -DEIGEN_MPL2_ONLY=1 -I"/home/ma21d501/R-4.4.0/library/nimble/include" -Wno-misleading-indentation -Wno-ignored-attributes -Wno-deprecated-declarations -I/usr/local/include -fpic -g -O2 -c P_2_MCMC.cpp -o P_2_MCMC.o
g++ -std=gnu++17 -I"/home/ma21d501/R-4.4.0/include" -DNDEBUG -DR_NO_REMAP -DEIGEN_MPL2_ONLY=1 -I"/home/ma21d501/R-4.4.0/library/nimble/include" -Wno-misleading-indentation -Wno-ignored-attributes -Wno-deprecated-declarations -I/usr/local/include -fpic -g -O2 -c P_2_BivExtMixc_MID_2.cpp -o P_2_BivExtMixc_MID_2.o
using C++ compiler: 'g++ (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0'
In file included from /home/ma21d501/R-4.4.0/library/nimble/include/nimble/RcppNimbleUtils.h:25,
from /home/ma21d501/R-4.4.0/library/nimble/include/nimble/NamedObjects.h:28,
from /home/ma21d501/R-4.4.0/library/nimble/inc
Calls: %dopar% -> <Anonymous>
Here are the specifications of the setup I am using:
library("nimble");
foo <- nimbleFunction( run = function(x = double(1)) {return(sum(x)); returnType(double())})
cfoo <- compileNimble(foo)
cfoo(1:11)
printErrors()
showCompilerOutput = TRUE