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NGS Group APS Sheffield

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1–27 of 27

Ludovic will continue with the 2nd part of his target resequencing presentation on Wednesday 6 March 2013. Location and time as usual: B52, 2-3pm.

Here is a link to some resources of the group

https://sites.google.com/site/ngsshef

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Clemens Küpper, Jenny Kaden2

12/11/14

{NGS Group APS Sheffield} Downstream effects of carrier RNA in RAD/ddRAD

Hi Clemens! Thanks for the info. If we need to use the carrier RNA we'll just go ahead and use it

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{NGS Group APS Sheffield} Downstream effects of carrier RNA in RAD/ddRAD

Hi Clemens! Thanks for the info. If we need to use the carrier RNA we'll just go ahead and use it

12/11/14

12/10/14

Downstream effects of carrier RNA in RAD/ddRAD

Hello all, Bit of a wet lab question. Does anyone know the effect carrier RNA might have on a ddRAD

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Downstream effects of carrier RNA in RAD/ddRAD

Hello all, Bit of a wet lab question. Does anyone know the effect carrier RNA might have on a ddRAD

12/10/14

claudiuskerth, … Ludovic Duvaux3

7/31/14

omic tools website

The same goes for me! I mean I'm sure it will be useful!!! Great thanks, Ludo On 31/07/14 17:05,

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omic tools website

The same goes for me! I mean I'm sure it will be useful!!! Great thanks, Ludo On 31/07/14 17:05,

7/31/14

12/4/13

New R Package to conduct Population genetic analysis

Hi all, there is a new R package available called PopGenome (http://cran.r-project.org/web/packages/

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New R Package to conduct Population genetic analysis

Hi all, there is a new R package available called PopGenome (http://cran.r-project.org/web/packages/

12/4/13

9/18/13

How to compare genetic diversity between regions? (especially in non-syn SNPs)

Dear All, We are trying to work out a specific problem I was hoping for your advice. We are looking

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How to compare genetic diversity between regions? (especially in non-syn SNPs)

Dear All, We are trying to work out a specific problem I was hoping for your advice. We are looking

9/18/13

k.kim, Claudius Kerth3

9/13/13

regex to match pattern allowing errors?

Good stuff Claudius, thanks!! I also made a script that deal with adapter sequence at the end as well

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regex to match pattern allowing errors?

Good stuff Claudius, thanks!! I also made a script that deal with adapter sequence at the end as well

9/13/13

claudiuskerth, Anna W Santure2

8/28/13

Unix tutorials now on OpenWetWare

Hi Claudius, that looks fantastic, well done! I am sure I will be revisiting these pages many times

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Unix tutorials now on OpenWetWare

Hi Claudius, that looks fantastic, well done! I am sure I will be revisiting these pages many times

8/28/13

Caitriona McInerney, … Ludovic Duvaux4

8/14/13

Another paper than can interest some of you: http://www.biomedcentral.com/1471-2164/14/542 Ludo On 08

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Another paper than can interest some of you: http://www.biomedcentral.com/1471-2164/14/542 Ludo On 08

8/14/13

Barney Wharam, Victor Soria-Carrasco2

8/12/13

Help with SNP calling

Hi Barney, I am sorry I don't have too much time to look into this this week, but I have found

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Help with SNP calling

Hi Barney, I am sorry I don't have too much time to look into this this week, but I have found

8/12/13

c.mcinerney, Ludovic Duvaux2

8/1/13

BAM to Fastq file conversion

Hi all, here is a thread on the SEQanswers forum if you want to learn more about this (ie if you want

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BAM to Fastq file conversion

Hi all, here is a thread on the SEQanswers forum if you want to learn more about this (ie if you want

8/1/13

a.westram, … Aaron Comeault4

7/26/13

Hey Anja, We used BGI to sequence the Timema genome. They had troubles making the large insert

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Hey Anja, We used BGI to sequence the Timema genome. They had troubles making the large insert

7/26/13

claudiuskerth, … Afsaneh7

6/5/13

file system navigation on Unix command line ... made easier

On 05/06/2013 12:31, Emma Gregson wrote: Dear Toni, I am currently using cufflinks on my RNAseq data,

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file system navigation on Unix command line ... made easier

On 05/06/2013 12:31, Emma Gregson wrote: Dear Toni, I am currently using cufflinks on my RNAseq data,

6/5/13

Barnaby Wharam, … Barney Wharam4

4/29/13

Genome alignments for SNP discovery - missing chromosomes problem!

Hi Claudius/All, I tried the suggested strategy of changing the scaled mutation rate, I used the code

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Genome alignments for SNP discovery - missing chromosomes problem!

Hi Claudius/All, I tried the suggested strategy of changing the scaled mutation rate, I used the code

4/29/13

Clemens, … claudiuskerth6

4/12/13

Bioinformatics / Pipelines

Hi Hazel, stacks should be the first tool you try out. It's a suite of programmes that in

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Bioinformatics / Pipelines

Hi Hazel, stacks should be the first tool you try out. It's a suite of programmes that in

4/12/13

Claudius Kerth (Google Drive)

3/11/13

RAD_practical_Victor (ngsshef@googlegroups.com)

I've shared an item with you. RAD_practical_Victor Google Drive: create, share, and keep all your

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RAD_practical_Victor (ngsshef@googlegroups.com)

I've shared an item with you. RAD_practical_Victor Google Drive: create, share, and keep all your

3/11/13

1/29/13

Computing Hardware / Iceberg Discussion

An short update from the CICS meeting and after some quotes from Dell: We try to take the best of

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Computing Hardware / Iceberg Discussion

An short update from the CICS meeting and after some quotes from Dell: We try to take the best of

1/29/13

NGS group APS (Google Drive)

1/21/13

Intro to Genomics - resources for presentations and workshops (ngsshef@googlegroups.com)

I've shared an item with you. Intro to Genomics - resources for presentations and workshops

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Intro to Genomics - resources for presentations and workshops (ngsshef@googlegroups.com)

I've shared an item with you. Intro to Genomics - resources for presentations and workshops

1/21/13

NGS group APS (Google Drive)

1/14/13

Introduction to Genomics Workshop (ngsshef@googlegroups.com)

I've shared an item with you. Introduction to Genomics Workshop Google Drive: create, share, and

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Introduction to Genomics Workshop (ngsshef@googlegroups.com)

I've shared an item with you. Introduction to Genomics Workshop Google Drive: create, share, and

1/14/13

claudiuskerth, Ludovic Duvaux4

11/9/12

think parallel !

Hi, well may be a bit complicated for people not familiar with scripting but let's try to explain

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think parallel !

Hi, well may be a bit complicated for people not familiar with scripting but let's try to explain

11/9/12

11/2/12

Google site for NGS group

Hi folks, please check out the website: https://sites.google.com/site/ngsshef There you'll find a

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Google site for NGS group

Hi folks, please check out the website: https://sites.google.com/site/ngsshef There you'll find a

11/2/12

ngs...@gmail.com

10/31/12

ngsshef@gmail.com has shared a calendar with you

Hello NGS Group APS Sheffield, We are writing to let you know that ngs...@gmail.com has given you

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ngsshef@gmail.com has shared a calendar with you

Hello NGS Group APS Sheffield, We are writing to let you know that ngs...@gmail.com has given you

10/31/12

NGS group APS (Google Sites)

10/30/12

ngsshef (ngsshef@googlegroups.com)

I've shared ngsshef Click to open: ngsshef Google Sites makes creating and sharing a group

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ngsshef (ngsshef@googlegroups.com)

I've shared ngsshef Click to open: ngsshef Google Sites makes creating and sharing a group

10/30/12

NGS group APS (Google Drive)

10/30/12

ComplexityReduction (ngsshef@googlegroups.com)

I've shared an item with you. ComplexityReduction Google Drive: create, share, and keep all your

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ComplexityReduction (ngsshef@googlegroups.com)

I've shared an item with you. ComplexityReduction Google Drive: create, share, and keep all your

10/30/12

10/12/12

Workshops, Conferences etc

Gavin and me want to start learning ourselves Python. We found a number of good web resources, for

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Workshops, Conferences etc

Gavin and me want to start learning ourselves Python. We found a number of good web resources, for

10/12/12

NGS Group APS Sheffield

10/12/12

Victor has already set up the Zotero Group where we can share and comment relevant literature. Please

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Victor has already set up the Zotero Group where we can share and comment relevant literature. Please

10/12/12

NGS Group APS Sheffield

10/10/12

Post anything particular about the RAD Tag method

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Post anything particular about the RAD Tag method

10/10/12

NGS Group APS Sheffield

10/10/12

Post here if you want to share something about the Molecular Work in the Lab.

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Post here if you want to share something about the Molecular Work in the Lab.

10/10/12

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