question about '-FL(fragment length)' option

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Dahun

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Jun 4, 2021, 12:06:17 AM6/4/21

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Hello all!

I have one question about fragment length of average plot.

Actually, it is proper to set fragment length as I made sequencing library kit and platform. Then, if I set the -FL option to only 1, are these fragment near the first nucleotide?

I want to draw average plot for only 5' sequence of mapped reads. So I want to know more about fragment length option.