Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent Calls: rownames<- -> rownames<- Execution halted

[Lauren Woodward]

I am running ngs plot using a file with my own genomic regions. Things worked really well before, but my system has updated now to R/3.5.0 and I have had a lot of difficulty getting ngsplot to work now.

This is the Error I receive

Configuring variables...Done

Loading R libraries.....Done

Analyze bam files and calculate coverage...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................Done

Error in dimnames(x) <- dn : 

  length of 'dimnames' [1] not equal to array extent

Calls: rownames<- -> rownames<-

Execution halted

[Lauren Woodward]

This is my original script 

ngs.plot.r -G hg38 -R bed -C software/PbsScriptsAndConfigFiles/Config_MLN51vsRNPS1_3UTR.txt -O ~/NgsPlotOutput/3UTR_MLN51vsRNPS1_hg38_len30 -L 1 -D refseq -RB 0.05 -FL 30