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We seem to have only eggNOG 4.5 annotations (from 2017).
I'll launch the job over the weekend and. Should be available sometime next week.
Cheers,
Renato
On 8/21/20 2:12 PM, Luis Pedro Coelho wrote:
> Dear Rémy,
>
> Sorry for the slow response, but it's holiday time...
>
> You'd need two pieces of data:
>
> 1. The actual FASTA file
>
> 2. An annotation file for each gene (these can be generated with eggnog-mapper and recent versions of NGLess can just consume the output of eggnog-mapper without further processing).
>
> I am not sure we (or the Bork group, @Renato, do you know?) have an up-to-date version of #2 (in particular, for eggnog-mapper2).
>
> Best
> Luis
>
> Luis Pedro Coelho | Fudan University |
http://luispedro.org
>
https://orcid.org/0000-0002-9280-7885
>
>
> On Mon, 17 Aug 2020, at 1:19 PM, Rémy Dugauquier wrote:
>>
>> Hello,
>>
>> I would like to make functional profile of some genes by using the OMRGC.v2 instead of OMRGC.v1 with the pipeline marine-profiler.ngl. Do you have an idea how I could do this?
>>
>> Thank you for your help,
>>
>> Have a nice day,
>>
>> Dugauquier Rémy
>>
>>
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- --
Renato Alves, Dr. rer. nat.
EMBL Bio-IT & HD-HuB (de.NBI, ELIXIR Germany), Heidelberg, Germany
Email:
renato...@embl.de
Github/Gitlab: @unode - Twitter: @renato_alvs
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