option to not report zero abundance genes count + collect

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ullo...@googlemail.com

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Mar 9, 2022, 9:18:19 AM3/9/22

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Dear Luis,

is there an option for example if I'm mapping my reads to GMGC to avoid reporting zero abundance genes for my samples (count+collect) in the output?

Best wishes,

Ulrike

Luis Pedro Coelho

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Mar 17, 2022, 8:41:14 AM3/17/22

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You can use discard_zeros=True in the count() call

https://ngless.embl.de/Functions.html#count

HTH

Luis

Luis Pedro Coelho | Fudan University | https://luispedro.org

https://orcid.org/0000-0002-9280-7885

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