paired fastq recognize different pattern

[ullo...@googlemail.com]

Dear all,

is there a way to either extend the list of recognized patterns for paired reads (eg. R1/R2) or is there a way to use space holders in the paired call?

at least my attempts failed

input = paired( current</>"*1.fastq.bz2",  current</>"*2.fastq.bz2")

Best,

Ulrike

[Luis Pedro Coelho]

Hi Ulrike,

There currently is not, but feel free to open an issue about it (as a feature request) as it's not a bad idea to try something like this (although the exact behaviour can be tricky to define).

https://github.com/ngless-toolkit/ngless/issues

Best

Luis

Luis Pedro Coelho | Fudan University | http://luispedro.org

https://orcid.org/0000-0002-9280-7885

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