I'm starting with another mouse project. I just saw that gmgc contains more mouse samples now than the mouse gut catalog from ng-metaprofiler. Would you suggest using the gmgc variant and if so, can I restrict the mapping/annotation to the mouse genes, and does that make sense in your opinion?
There is even a big mouse catalog (871 samples) from HZI Braunschweig
, does it make sense to include that at some point in the mouse gut profiler as standard? It includes the data from Xiao et al 2015. They will soon release v2 with even more mice and as far as I know, annotated with eggnog.