ngl string replace

[ullo...@googlemail.com]

Dear all,

Is there a syntax to do string replacements, e.g. reading in a sample file and replacing the path within the ngl script?

example:

samples = readlines('samplelist.txt')

#head samplelist.txt
#X204SC-Z01-F002_02/raw_data/muer1
#X204SC-Z01-F002_02/raw_data/muer2
#X204SC-Z01-F002_02/raw_data/muer3
#X204SC-Z01-F002_03/raw_data/muer4

...

current = lock1(samples)
input = load_fastq_directory(current)

RESULTS = ('muer1','muer2','muer3',...) # automatically

or out:

#X204SC-Z01-F002_02/preprocessed/muer1
#X204SC-Z01-F002_02/preprocessed/muer2
#X204SC-Z01-F002_02/preprocessed/muer3
#X204SC-Z01-F002_03/preprocessed/muer4

Best,

Ulrike

[Luis Pedro Coelho]

Currently, no; but this is not a bad idea for a future version.

Best

Luis

Luis Pedro Coelho | Fudan University | http://luispedro.org

https://orcid.org/0000-0002-9280-7885

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