Dear List,
I just uploaded a test (beta) version of NGLess 1.4.0. There are no huge differences wrt 1.3.0, but it should be faster and it updated the internal version of megahit (so, hopefully, the assemblies are better). There is also a builtin module for GMGC (
Global Microbial Gene Catalog).
I am tagging it beta and still testing it, but the expectation is that this will be stable enough to release very soon. You can already run the beta, by downloading it from:
Or using docker:
docker run -it nglesstoolkit/ngless:1.4.0-beta1 ngless --version
*
The way that NGLess is built with its dependencies also changed completely. It uses the fact that nix now includes both bioinformatics tools and makes it easy to obtain static versions of tools to embed.
HTH
Luis