NGLess

Demand has indeed outstripped supply, so I posted a second date: July 5 https://forms.gle/

Hi Mette, Thank you very much! Unfortunately, it didn't work for me (v2.6). How did you find out

But in my case, it's the other way around. The dist1 file is much bigger than all1. Any

Dear all, I tried to split my gmgc map and count parts to spare some memory and runtime. Somehow, I

Dear Vadim, In principle, yes, the functions should only read fastq files. I would expect that most

That is strange. Are the script.ngl files in those directories the same? Best Luis Luis Pedro Coelho

Hi Ulrike, There currently is not, but feel free to open an issue about it (as a feature request) as

The modules evolve somewhat separately from the main programme, so there has been no update to them

Hi Ulrike, (Because of the Lunar New Year celebrations, I'm now catching up with a lot of the non

Dear Luis: The example scripts you provided used 'scaled'. However, I am trying to do use

I would guess counts = count(mapped, map_file="prok-OM-RGC-v2.0.0.emapper.annotations-v2.tsv.xz

Dear List, As discussed before, we've released NGLess 1.3.0, which contains a series of small

Oh, this is a very good point. The checks for headers are indeed not run on --validate-only (although

I just committed a slight improvement so that you'd get a much better error message in the future

When you think about it, I don't it make sense first to sum all the reads mapping to genes with a

Ah, ok. I read your previous message too fast. I tested it locally and, indeed, they behave

Hi all, I'm working with NGLess to annotate a couple of marine metagenomes samples. I was

Hi Queten, I recently joined this group, and I read your question so I hope that my answer don't

1. If I run the job without annotation file and summarise the result based on sequence, later I

Thanks Luis. I will combine both strategies then. Happy Christmas! Florian Le mercredi 23 décembre

Hi, samples = readlines('samplelist.txt') samples is going to be a list of strings (NGList

Hi Luis, I think NGLess is a great tool due to its efficiency, reproducibility and user-friendly. It

Dear Natasha, Indeed, I don't see any reason why this should not work. In fact, it works for me (

Okay, I implemented this for the github version: https://github.com/ngless-toolkit/ngless/commit/

I found the bug. It was a stupid mistake in my bashscript. I was using | instead of || when testing

Dear Renato, Ok, good to know =). Thanks a lot for the quick answer. I think I don't specifically

Dear Iñigo, What you are asking for is quite reasonable, but there is currently no way to do it that

Oh, sorry, yes. I got confused Disregard my previous message Luis Luis Pedro Coelho | Fudan

Thanks Luis I also realised that it was an internal module just before reading your reply. I have now

It does semi-work, but the interface is not so great. This is, unfortunately, a known issue. The