Help with a memory problem

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Kevin Guan

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Jun 23, 2021, 2:09:18 PM6/23/21
to Nextflow
After running the code: 

nextflow run nf-core/rnaseq -revision 1.4.2 -profile test, gcp -bg --outdir ~/runs/TESTRU
N_FOLDER/results --google_bucket gs://sbi-guan-k-upload/runs/TESTRUN_FOLDER/work --google_zone us-east4-a --google_preemptible false

I get the error:
Error executing process > 'get_software_versions'

Caused by: Process requirement exceed available memory -- req: 2 GB; avail: 987.7 MB

Therefore, I tried to go online to find out a way to increase the memory.

I tried this website:

But the command:
sudo growpart /dev/sda 1

 
did not exist in the Google SSH

What should I do now? Should I go the disk image and try to change the memory from there?

The memory from the disk says it's 50 GB, so I don't know why the shell says the Nextflow can't run because only 987.7 MB is available.
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