adding multiple conda channels in a process

[Noah Legall]

Greetings,

I'm trying to build an environment in conda, specifically the prokka package. In order for it to be successfully downloaded however, it needs to have access to multiple conda channels ("default","bioconda","conda-forge"). In the documentation I see that this is specially done using this method:

process example{
conda = "bioconda::salmon=1.5.2"

"""

command goes here

"""

}

but I will need access to multiple channels. How can I achieve this?

Thanks in advance.

[Paolo Di Tommaso]

> Multiple packages can be specified by separating them with a blank space eg. bwa=0.7.15 fastqc=0.11.5

See more at this link. In alternative you should consider to create a custom recipe yaml file and specify it in place of the tool coordinate 

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[Noah Legall]

Missed the reply - but thank you so much! will try this soon