"test" E667: Fsync failed

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sky_blue

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Nov 9, 2015, 9:35:12 AM11/9/15
to Nextflow

Hello,

When I run RNAseq pipeline withmyself(eight samples),it appeared errors as follows,file can not written,but the Memory is enough.

"test" E667: Fsync failed

WARNING: Original file may be lost or damaged

do not quit the editor until the file is successfully written!

Press ENTER or type command to continue

code:

process filer_process{

input:

echo true

set  file(rawdata_dir) from rawdata

output:

set file('filter/shell/*_filter.sh')into filtershell 

script:

"""

perl filter.pl

    

                                                         

"""

}



process filter_run{

input:

echo true

set file(filter) from filtershell

output:

set val(filterdata_folder_dir) into filterdata

script:

"""



sh $filter


"""

}



Paolo Di Tommaso

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Nov 9, 2015, 9:40:15 AM11/9/15
to Nextflow
What component is reporting that error message? 

Nextflow? the cluster? It's not clear. 


p
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