Nextflow and AWS Batch with Fargate?

[Jukka Forsgren]

Hi community,

Simple question: Does Nextflow support AWS Batch with the new AWS Fargate compute environment [1]? I don't see why not, because even the old EC2 based managed compute environment used ECS Agent and ran jobs in containers. But have anyone of you tried the Fargate support in practise? Thanks!

[1] https://aws.amazon.com/blogs/aws/new-fully-serverless-batch-computing-with-aws-batch-support-for-aws-fargate/

BR,

Jukka

[Paolo Di Tommaso]

The problem with Fargate is that it does not allow host mounts which NF needs to access the aws cli tool without installing it in the container.

p

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