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Hi all
Seeking DSL2 help: I have this below DSL1 code - process Two will not work even then and was told DSL2 would be neededA bunch of *.csv files will be output from process One - each of those csv files need to be a separate process and used with file x_predictor
process One {
executor 'local'
input: file y_target from input_csv_y_target_ch
output: path('*.csv') into predict_ml_ch
script:
"""
awk -F, '{ for (i=1; i < NF; i++) print \$1, \$(i+1) > i ".csv"}' $y_target
"""
}
process Two {
cpus 10
memory '100 GB'
conda 'path_to_conda'
input:
file x_predictor from input_csv_x_predictor_ch
file split_csv_file from predict_ml_ch.flatten()
script:
"""
pyscript.py $x_predictor $split_csv_file
"""
}
Thanks in advance
drhp...@gmail.com
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Dec 14, 2021, 4:41:09 AM12/14/21
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Hi Anand,
Did you manage to figure this out via the help on nf-core Slack? Be great if you can post your eventual solution here.