Compile failed for sources ... unexpected token

[Brandon]

Hi,

I ran the workflow using nextflow in below.

When I run the workflow, my disk is full.

so I canceled my job (CTRL+C) and  move this folder to other disk. (In same server, just  there is difference of mount point)

and I rerun the workflow with -resume parameter. 

$ nextflow run main.nf -resume
N E X T F L O W  ~  version 0.23.0
Launching `main.nf` [cranky_ride] - revision: aaa6b16abb
ERROR ~ Unable to parse config file: 'nextflow.config'
  Compile failed for sources FixedSetSources[name='/groovy/script/Script3C9E9E48B7BE41B67209CB67AA38D22A/_nf_config_dc611d72']. Cause: org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed:
  /groovy/script/Script3C9E9E48B7BE41B67209CB67AA38D22A/_nf_config_dc611d72: 38: unexpected token: << @ line 38, column 1.
     <<<<<<< HEAD
     ^
  1 error

 -- Check '.nextflow.log' file for details

Could you check this?

Thanks in advance!

[Paolo Di Tommaso]

I guess there's an invalid line/character in your nextflow.config file. Have a look to it. 

p

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[Brandon]

Yes, Thank you!

2017년 1월 25일 수요일 오후 5시 31분 36초 UTC+9, Paolo Di Tommaso 님의 말:

I guess there's an invalid line/character in your nextflow.config file. Have a look to it. 

p

On Wed, Jan 25, 2017 at 9:22 AM, Brandon <brandon.k...@gmail.com> wrote:

Hi,

I ran the workflow using nextflow in below.

When I run the workflow, my disk is full.

so I canceled my job (CTRL+C) and  move this folder to other disk. (In same server, just  there is difference of mount point)

and I rerun the workflow with -resume parameter. 

$ nextflow run main.nf -resume
N E X T F L O W  ~  version 0.23.0
Launching `main.nf` [cranky_ride] - revision: aaa6b16abb
ERROR ~ Unable to parse config file: 'nextflow.config'
  Compile failed for sources FixedSetSources[name='/groovy/script/Script3C9E9E48B7BE41B67209CB67AA38D22A/_nf_config_dc611d72']. Cause: org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed:
  /groovy/script/Script3C9E9E48B7BE41B67209CB67AA38D22A/_nf_config_dc611d72: 38: unexpected token: << @ line 38, column 1.
     <<<<<<< HEAD
     ^
  1 error

 -- Check '.nextflow.log' file for details

Could you check this?

Thanks in advance!

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