nextflow run; "-with-report" is not recognized

[Alejandro Lebrero]

Hi everyone

I'm trying to run a pipeline using the -with-report option ithout success, the following error is triggered: "Unknown option: -with-report -- Check the available commands and options and syntax with 'help'"

I've tryed using different commands all without success:

 - sudo nextflow run pipeline.nf -with-report 'report.html' 

 - nextflow run pipeline.nf -with-report 'report.html' 

 - sudo nextflow run pipeline.nf -with-report 

 - nextflow run pipeline.nf -with-report 

by the way, my nextflow version is 0.27.0 build 4751 and my nextflow.config file have this:

trace {
   enabled = true
   file = 'pipeline_trace.txt'
   fields = 'task_id,name,status,exit,realtime,%cpu,rss'
}


timeline {
   enabled = true
   file = 'timeline.html'
}


report {
   enabled = true
   file = 'report.html'
}

Any help will be very appreciated. 

Thanks a lot. 

Alejandro. 

[Paolo Di Tommaso]

This feature has been introduced recently (version 0.26.x). Likely you have an older release. Update NF to the latest version with the command 

nextflow -self-update

Hope it helps. 

p

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[Alejandro Lebrero]

Thank you Peolo. I was using the 0.27.x version but seems to be bad instlled or reading a config foie from other folder. Now, I delete and reinstall nextflow and all is wotking!!!

Again, thanks for your help.

Alejandro.

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