This only affects calculations using CIOVERLAP.
This does not affect COLUMBUS dynamics.
The default will be modified in future releases of Newton-X, but for now, you can fix this via input (user_config.nml). Add or edit the &cioverlap section with the cio_options:
&cioverlap
cio_options = -s transmomin -b -t 5e-4 -e -1
/
The important thing here is the
-b option, but by default, NX-NS was using
-a. This assumes the w
rong order of old and new geometries in the overlap matrix: https://light-and-molecules.gitlab.io/newton-x-package/manual/theo_background/#cioverlap-program
-a: phases of "new" w.f. in rows (bras); use file "phases.old" to patch phases of wavefunctions from previous step
-b: phases of "new" w.f. in columns (kets); use file "phases.old" to patch phases of wavefunctions from previous step
Best regards,
Rafael