Execution Error
chaitu
I installed neuronvisio from your website and then tried executing the
command (from neuronvisio.controls import Controls) which gave me an
error (see below). I have neuron installed on my ubuntu 10.04 and I
also could not find matplotlib in /etc directory. Please help me to
resolve it. Thank you.
In [4]: from neuronvisio.controls import Controls
---------------------------------------------------------------------------
ImportError Traceback (most recent call
last)
/home/krishna/<ipython console> in <module>()
/usr/local/lib/python2.6/dist-packages/neuronvisio/controls.py in
<module>()
33
34 from subprocess import call
---> 35 from manager import SynVecRef
36 os.environ['ETS_TOOLKIT'] = 'qt4'
37 import logging
/usr/local/lib/python2.6/dist-packages/neuronvisio/manager.py in
<module>()
18 """:synopsis: Manage the map between vectors and sections"""
19
---> 20 from neuron import h
21 import numpy as np
22 import os
ImportError: No module named neuron
Mike Vella
Did you recently upgrade python or ubuntu?
chaitu
the installation instructions:
sudo apt-get install python-qt4 ipython python-matplotlib \
python-setuptools python-tables
Other than these packages I installed git. I haven't installed any
other packages.
On Dec 18, 10:07 am, Mike Vella <vellam...@gmail.com> wrote:
> Did you recently upgrade python or ubuntu?
Mike Vella
Can you tell us what version of python runs when you type python in the cli?
chaitu
Python 2.6.5 (r265:79063, Apr 16 2010, 13:57:41)
[GCC 4.4.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>>
On Dec 18, 10:24 am, Mike Vella <vellam...@gmail.com> wrote:
> Can you tell us what version of python runs when you type python in the cli?
Mike Vella
It seems to me you don't have the neuron package for python ininstalled? Try the neuron website or if you have a 64bit machine try my portable neuron http://www.srcf.ucam.org/~mv333/wordpress/
chaitu
I downloaded the package from the link you provided. I could not find
files ./local_python.sh or ./pnpython.sh which is given in your
instructions. Could you let me know where can I find these files?
Thank you.
On Dec 18, 10:31 am, Mike Vella <vellam...@gmail.com> wrote:
> It seems to me you don't have the neuron package for python ininstalled?
> Try the neuron website or if you have a 64bit machine try my portable
> neuronhttp://www.srcf.ucam.org/~mv333/wordpress/
Mike Vella
On a flight atm but will get back to you soon.
Michele Mattioni
as Mike pointed out you are missing the Neuron package:
http://www.neuron.yale.edu/neuron/
Some installation tip are available here:
http://www.davison.webfactional.com/notes/installation-neuron-python/
HIH,
Michele.
chaitu
Thank you Michele and Mike for the instructions to install neuron with
python support. I am having a small problem after installing
neuronvisio. In order to run ipython -qt4, I need to copy file from /
etc/matplotlibrc to ~/.matplolib/matplotlibrc. But I cannot find
matplotlibrc in /etc directory. Where am I going wrong or where can I
find this file? Thank you.
On Dec 18, 4:23 pm, Michele Mattioni <matti...@gmail.com> wrote:
> Hi there,
>
> as Mike pointed out you are missing the Neuron package:http://www.neuron.yale.edu/neuron/
>
> Some installation tip are available here:http://www.davison.webfactional.com/notes/installation-neuron-python/
>
> HIH,
> Michele.
>
>
>
>
>
>
>
> On Sun, Dec 18, 2011 at 7:30 AM, Mike Vella <vellam...@gmail.com> wrote:
> > On a flight atm but will get back to you soon.
>
Michele Mattioni
http://matplotlib.sourceforge.net/users/customizing.html