3D view and bitmap images
KTH
give images of scaled morphologies after scaling?
I feel the 3D rendering gives the same magnification even after
scaling the reconstructions.
Could someone help me out.
or Does anyone know a good source to get nice pictures of
reconstructions for publication purposes?
Thanks.
Ben Suter
not being accurate.
Have you tried cvapp?
http://www.compneuro.org/CDROM/docs/cvapp.html
Or NLMorphologyViewer?
http://neuronland.org/
The NLMorphologyConverter app, also from NeuronLand, will let you
scale your SWC reconstructions in a number of ways, place the soma the
origin, and other operations that you may find useful.
You may need to take a screen shot and touch it up in a bitmap editor,
such as Paint on Windows. I don't recall whether these programs let
you save directly to a 2D graphics format, such a PNG or JPG.
Or if you are comfortable using Matlab, I believe the TREES toolbox
could be of interest:
http://www.treestoolbox.org/
If anyone has a preferred pipeline for generating figures from SWC
files, I'd also be quite interested in any tips you could share.
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KTH
mentioned and found luck in MATLAB trees tool box.
I scaled them in Neuromantic.(Matlab might do this too, have to play
with it to find a way)
However, MATLAB TREES tool box allowed me to save morphologies in EPS,
TIFF, JPEG formats.
It is really helpful.
Thanks a lot.
KTH
On Feb 20, 1:12 am, Ben Suter <ben.su...@gmail.com> wrote:
> I seem to recall some past comments about the scale bar in the 3D view
> not being accurate.
>
> Have you tried cvapp?http://www.compneuro.org/CDROM/docs/cvapp.html
>