Neuromantic V1.7.5 Download

[Darren Myatt]

Hi everyone,

As promised, here is a download link for the newest version of
Neuromantic (V1.7.5) produced for DIADEM. It's a bit.ly shortened
link that lets me keep track of the number of downloads and vaguely
where they're coming from, but it points directly to my DropBox
account.

http://bit.ly/buYykd

The contents of the zip should work in a self-contained fashion, and
should not require any files from any previous downloads.

Now, I'm pretty sure that I've included all the dependent DLLs in the
zip file, but I don't have a clean platform to test on so I can't be
sure. Let me know if it fails on start-up and I'll host the missing
files asap.

The main changes to the application are:
* Dynamic memory management. You should hopefully not get annoying
access violations when you load in a stack that's too big, as
Neuromantic will automatically load/unload images dynamically to keep
the memory footprint acceptable. There will probably still be memory
issues if you attempt to visualise large stacks in 3D, though, which
is something I may address in future now that I have a working build.
* Multi-stack GUI - this lets you use large-tiled projects and show/
hide different tiles as tiled, as well as manually entering offsets.
The "Load/Save Tiled Project" menu options will save all the stack
positional data to an .nproj file (the reconstruction itself will
still need to be save separately to SWC). If you lose the multi-stack
GUI, open it again through Window->Show Multistack GUI
* Custom labelling schemes - you can now change the colours associated
with each segment type, so no more endless yellow after segment type
6. See also Load/Save labelling scheme on the main menu.
* A few 3D GUI fixes - the aspect ratio now remains correct when
resizing the window, which had been bugging me for ages, and the lines
are properly anti-aliased.

For other minor changes see the _README.txt file.

Feel free to pass on the download link to anyone who might be
interested (once you're sure it's not missing any files!).

[Brian Huang]

Hi Darren,

Thanks for providing this great software. I started to do neuronal reconstruction recently, and I download Neuromantic (V1.7.5). When I import a images stack (16-bit tiff file), it pup out a error " bool_fastcallSerialStack::LoadStack(AnsiString FileName) - If you can see this error, then the world is probably about to end. Please contact developer. ". Do you know what's the problem? I try to find a answer in google search, but I cannot find one. 

Thanks,

Brian 

[Darren Myatt]

Hi Brian,

My suspicion would be that either the format is some flavour of TIFF that the library doesn't support well or that the stack is so large that it's running of memory.  Neuromantic was built in Borland, which never properly supported 64-bit compilation, so it has issues with anything over around 2-gig, even when the underlying machine has a lot more.  If you want to try and get it working, I'd try either loading in a subset of your stack and see if that works, or try altering the image format and see if that works.

Darren

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[Brian Huang]

Hi Darren,

Thanks for the reply. Now I can open it. Thanks very much.

Best 

Brian 

On Wednesday, August 25, 2010 3:20:23 PM UTC-4, Darren Myatt wrote:

[Timo van Kerkoerle]

Hi Darren,

Thank you for your great software, there is no alternative for the data we have. The options in the new version to be able to remove stacks and add an offset between stack is extremely useful for us.

I was wondering if it is possible to load in tiled projects files from previous versions. I get an error: "Error occurred when attempting to open Project File. Please refer to Volume 4, page 357, paragraph 3 of the manual for details."

In version 1.6.3 it also gave an error when loading these project files but it still loaded them. The reason of the error was that I removed slices in stack that I previously loaded in (and was unable to unload):

"bool_fastcall LoadTiff(AnsiString FileName, Graphics::TBitmap *Bitmap, int ImageIndex) - Image index out of bounds at ImageIndes = 37"

All the best,

Timo

 

On Wednesday, August 25, 2010 3:20:23 PM UTC-4, Darren Myatt wrote:

[Wolfgang Stein]

Hello

is there an up to date download link? the dropbox link does no longer function and all the previous versions on the website are missing dlls. 

Thanks!

[Jia He]

Hi Darren,

Thanks for your great work on Neuromantic (V1.7.5), but now the download link has expired. Can you provide another available link of Neuromantic (V1.7.5)? It will greatly help to process the image stacks and SWC format files from DIADEM CHALLENGE efficiently.

Thanks,

Jia He

在 2010年8月26日星期四 UTC+8上午3:20:23，Darren Myatt写道：

[Jia He]

Hello

The previous dropbox web page can not be found, is there any other links for downloading the Neuromantic 1.7.5? Or is there any other methods/softwares to load multiple image stacks and set their coordinates to aligning with the reconstruction results?

Thanks！ 

在 2010年8月26日星期四 UTC+8上午3:20:23，Darren Myatt写道：

Hi everyone,