Download tables for latest MANC version 1.2.1

[Jan Clemens]

Hi, we are doing MANC analyses using our own libraries and use the MANC exports provided with version 1.0 (https://console.cloud.google.com/storage/browser/flyem-manc-exports). Since the information is now slightly outdated, is there a way to access neuron and connectivity information (including annotations) for the latest version of MANC available on neuprint (v1.2.1)? Thanks!!

[Jasper Phelps]

I second this request – getting a release of the tables underlying the MANC v1.2.1 connectome would be great!

Thanks

[Jan Clemens]

Hi,

turns out one can fetch the tables using python:

https://connectome-neuprint.github.io/neuprint-python/docs/queries.html#server-built-in-queries)

Hope this helps.

Cheers,

Jan

from neuprint import fetch_neurons, fetch_adjacencies, fetch_traced_adjacencies, fetch_meta

c = Client('neuprint.janelia.org', dataset='manc:v1.2.1', token=YOUR_API_TOKEN)

traced_df, roi_conn_df = fetch_adjacencies() # fetches the connectivity table

neurons_df, roi_counts_df = fetch_neurons() # fetches the neuron table with cell types etc