AssertionError: Since you listed nonprimary rois ({'g1(R)'}), please specify include_nonprimary=True

[Miranda D]

Hi Stuart,

I have the same error as this github error:

https://github.com/connectome-neuprint/neuprint-python/issues/53

When trying to view synapses in one compartment of the gamma lobe I get this error:

AssertionError: Since you listed nonprimary rois ({'g1(R)'}), please specify include_nonprimary=True

My code:

import pandas as pd
import numpy as np

import neuprint
from neuprint.queries import fetch_synapse_connections, fetch_neurons, fetch_mitochondria, fetch_synapses_and_closest_mitochondria
from neuprint import Client, NeuronCriteria as NC, SynapseCriteria as SC
c = Client('neuprint.janelia.org', dataset='hemibrain:v1.2.1', token='eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJlbWFpbCI6Im1pcmlkeXNvbkBnbWFpbC5jb20iLCJsZXZlbCI6Im5vYXV0aCIsImltYWdlLXVybCI6Imh0dHBzOi8vbGg0Lmdvb2dsZXVzZXJjb250ZW50LmNvbS8tZVg2SDZmci16OGsvQUFBQUFBQUFBQUkvQUFBQUFBQUFBQUEvQU1adXVja1hGbC1RVGdnZ21mbC1XSW5jYjdKQWVkRHRVQS9zOTYtYy9waG90by5qcGc_c3o9NTA_c3o9NTAiLCJleHAiOjE3OTIxMDA1NzB9.GHs-QXzzPPsh9x-xY9B_HjlfC_alapF7KSoSd_TWzao')
c.fetch_version()
from neuprint.utils import tqdm

#inputs in gamma from PPL1-01
from neuprint import fetch_synapse_connections, SynapseCriteria as SC
criteria=SC(rois=['g1(R)'])

fetch_synapse_connections(source_criteria=None, target_criteria=393766777, synapse_criteria=criteria)

Thank you,

Miranda

[Berg, Stuart]

Hi Miranda,

Your code references 'g1(R)'.  Did you mean 'gL(R)'?

-Stuart

On Mar 13, 2024, at 11:11 AM, Miranda D <miri...@gmail.com> wrote:

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[Berg, Stuart]

Hi again Miranda,

Sorry, I misunderstood the problem.  I'm working on a fix.  Please keep an eye on that github issue for updates.

-Stuart