NetPyNE v1.0.1 is now available

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Joe Graham

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Feb 18, 2022, 10:20:28 AM2/18/22
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NetPyNE v1.0.1 is now available. For a complete list of changes and bug fixes see: https://github.com/Neurosim-lab/netpyne/releases/tag/v1.0.1
         
See here for instructions to install or update to the latest version: http://www.netpyne.org/install.html

**New features**

- Added new plotting module with custom plotters

- Separated analysis.plotSpikeRaster into analysis.prepareRaster and plotting.plotRaster

- Separated analysis.plotSpikeHist into analysis.prepareSpikeData, analysis.prepareSpikeHist, plotting.plotSpikeHist and plotting.plotSpikeFreq

- Separated analysis.plotLFP into analysis.prepareLFP, analysis.preparePSD, analysis.prepareSpectrogram, plotting.plotLFPTimeSeries, plotting.plotLFPPSD, plotting.plotLFPSpectrogram, and plotting.plotLFPLocations

- Mapped old analysis.plots onto new ones

- Interfaced with LFPkit to enable recording/plotting of dipole current moments and EEG signals

- Added Current Source Density (CSD) analysis and plots

- Enabled selecting a subset of cells to save individual LFP signal from via cfg.saveLFPCells = [...]

- Added cfg.saveLFPPops to store LFP generated individually by each population

- Function to return batch parameter combinations (used for GUI)

- Added jupyter nb tutorials

- Added hippocampus CA3 model example

- Updated SONATA importing

- Improved distributed saving and interval saving (more robust)

- Added mapping of netParams values within cfg (used for batch sims in GUI)

- Extended Action tests to pull requests (not just push)


**Bug fixes**

- Fixed setting cfgMapping nested params when not string

- Fixed defineCellShapes when sec['hObj'] is not a h.Section()

- Fixed bug when using lognormal in string functions

- Added rxdmath to avoid RxD error

- Fixed bug in Tutorial 8 (batch)

- When saving to JSON wait until file exists before returning (to avoid exiting before saving finished)
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