NetPyNE v0.9.9.1 released

[Joe Graham]

NetPyNE v0.9.9.1 is now available. For a complete list of changes and bug fixes see:
https://github.com/Neurosim-lab/netpyne/releases/tag/v0.9.9.1 and
https://github.com/Neurosim-lab/netpyne/releases/tag/v0.9.9

For instructions to install or update NetPyNE to the latest version: http://www.netpyne.org/install.html

New features

* Plot current source density (CSD) from local field potential (LFP) simulated data

* Additional customization of 3D shape plot: show voltage as color, change proportions, include axis labels

* Enable modifyConns based on properties of presynaptic neurons

* Replaced -np with -n so compatible for all commands: mpiexec/mpirun/srun

* Updated netrxd.py and network.py to include RxD's Parameter class, naming of States and Regions, and specification of Region geometries that do not require arguments like 'membrane' and 'inside'

* Improved recordTraces such that the cond 'gid' can accept a list of numbers as well as a single number

* Added a new tutorial going through use of NetPyNE with virtual environments and Jupyter notebooks

* Added cfg.use_fast_imem to enable recording membrane voltage via seg.i_membrane_

* Added swc import ability to importCell (and thus importCellParams)

* Batch now polls processes, prints their output and terminates them once completed

* Updated web documentation to explain importing SWC files and add Recording Configuration section

* Added link to Jupyter notebook tutorial and video to website front page

Bug fixes

* Made rate_b be positional instead of keyword argument in rxd multiCompartmentReaction

* Check if _morphSegCoords exists in population before using

* Fixed bug to avoid recursive creating of synMechs when loading with cfg.oneSynPerNetcon=True

* Fixed an issue with running rxd code twice

* Wait until all subprocesses have ended before completing mpi_bulletin batches

* Fixed repeated rxd simulation issue for rates and reactions

* Fixed pointNeuron spikePattern 'sync' option

* Fixed gathering of dipoles when running on multiple cores (uncommented lines that had been commented for debugging)