Hmmmm... Interestingly I think I have found a confirmation of a micro filament between two cathodes in the IN-1.
It's a long story, but for those who are impatient, skip to the "Round up of current observations" near the end.
In a previous version of a direct drive clock I made, digits 4 and 8 came on together, and then after a couple of weeks 1 and 6. Looking at the order of the cathodes it is (from the back): 1, 6, 0, 2, 5, 9, 7, 4, 8, 3. So, 1 and 6 are adjacent, as are 4 and 8, therefore a micro-filament is a reasonable explanation.
I previously put this down to a cacked Atmega 328, because I measured the pin voltage at the Atmega output pin, and read it as "just on" at about 0.7V. I made this single digit clock as a way of using up an Atmega that had blown a few of the pins due to me having two left hands, and thought no more of it, as I had already damaged the output driver of the microcontroller.
However an hour or so ago, now the "neat" version of the clock I made has started showing 1 and 6 together, although the Atmega328 is new and undamaged!
Previously I observed that giving the tube a firm but not violent tap (like you used to do with malfunctioning TVs) resolved the issue. But It would soon again re-appear. I put this down to a bad solder joint, but it always left me puzzled as to exactly which solder joint could cause 4 and 8 to appear. No single binary pin could cause that.
Now something starts to make sense. In my direct drive clock, I am not being at all fastidious about the driving voltage: the regulator software is just taken from another clock where I am a lot more careful about the timing and blanking, and where I turned off the HV generation between digits to avoid over-voltage.
(Anyone wants to see the code for the original clock, it is here
https://github.com/isparkes/ArdunixNix6 and open source)
In the clocks that show the problem, I'm just doing the bare minumum to stop the worst over voltage effects (digits ghosting on even when they should be off), but I do know that I am driving the tube to desperation, because I'm getting a fair amount of "flare" on certain cathodes (see the picture - The strange glow in the background is emanating from the lead that goes from the pin on the rear of the tube to the cathode, and that is not normal).
A round up of current observations:
1) In my IN-1 clocks which are multiplexed and driven according to the voltage specification (i.e. I was careful about it), I do NOT see micro-filaments, even after around 2 years of continuous use.
2) In the IN-1 clocks which are direct driven, probably with out of spec voltages (TBV), micro-filaments appear after 2-4 weeks
3) My tubes in the offending clocks are from 84 and 87 (i.e. NOT due to poor materials after Soviet breakup after 87)
4) The offending clocks do not do any form of brightness control or ACP, whereas the "good" clocks do.
So, problem confirmed. Cause as yet unknown.
Next steps will be to monitor the voltages in the "bad" clocks, and make software changes to ensure the driving voltage remains "in spec".
I'll keep you all updated.