recovery fails with read past EOF at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:223)

[Sanjay]

I am using batchinserter with embedded mode (similar to http://code.paananen.fi/2012/04/05/neo4j-batchinserter-and-spring-data-for-neo4j/). After successful batchinsert, I am not able to start the server due to the following error. I did this (incremental) batchinsert on existing database but after stopping a running server. Have I corrupted the index? Any clues? 

Neo 1.8.1

Java(TM) SE Runtime Environment (build 1.7.0_11-b21)

Java HotSpot(TM) Server VM (build 23.6-b04, mixed mode) 

Mar 18, 2013 3:45:13 PM org.neo4j.server.logging.Logger log

WARNING: WARNING! You are using an unsupported Java runtime. Please use JDK 6.

Mar 18, 2013 3:45:13 PM org.neo4j.server.logging.Logger log

INFO: Loaded neo4j tuning properties from conf/neo4j.properties

Mar 18, 2013 3:45:14 PM org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog doInternalRecovery

INFO: Non clean shutdown detected on log [/home/sanjay/work/workspace/db/bengi/graph/dataimport/graph.db/index/lucene.log.1]. Recovery started ...

Mar 18, 2013 3:45:16 PM org.neo4j.server.logging.Logger log

SEVERE: Failed to start database.

Mar 18, 2013 3:45:16 PM org.neo4j.server.logging.Logger log

SEVERE: 

org.neo4j.kernel.lifecycle.LifecycleException: Failed to transition org.neo4j.kernel.InternalAbstractGraphDatabase$DefaultKernelExtensionLoader@60d7ea from NONE to STOPPED

at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:388)

at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:82)

at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:116)

at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:230)

at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:79)

at org.neo4j.graphdb.factory.GraphDatabaseFactory$1.newDatabase(GraphDatabaseFactory.java:70)

at org.neo4j.graphdb.factory.GraphDatabaseBuilder.newGraphDatabase(GraphDatabaseBuilder.java:205)

at org.neo4j.server.database.CommunityDatabase.start(CommunityDatabase.java:55)

at org.neo4j.server.AbstractNeoServer.start(AbstractNeoServer.java:124)

at org.neo4j.server.Bootstrapper.start(Bootstrapper.java:85)

at org.neo4j.server.Bootstrapper.main(Bootstrapper.java:49)

Caused by: java.lang.RuntimeException: java.io.IOException: read past EOF

at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexWriter(LuceneDataSource.java:685)

at org.neo4j.index.impl.lucene.LuceneDataSource.syncGetIndexSearcher(LuceneDataSource.java:574)

at org.neo4j.index.impl.lucene.LuceneDataSource.getIndexSearcher(LuceneDataSource.java:540)

at org.neo4j.index.impl.lucene.CommitContext.ensureWriterInstantiated(CommitContext.java:58)

at org.neo4j.index.impl.lucene.LuceneCommand$RemoveCommand.perform(LuceneCommand.java:254)

at org.neo4j.index.impl.lucene.LuceneTransaction.doCommit(LuceneTransaction.java:285)

at org.neo4j.kernel.impl.transaction.xaframework.XaTransaction.commit(XaTransaction.java:319)

at org.neo4j.kernel.impl.transaction.xaframework.XaResourceManager.injectOnePhaseCommit(XaResourceManager.java:387)

at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyOnePhaseCommitEntry(XaLogicalLog.java:504)

at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.applyEntry(XaLogicalLog.java:434)

at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.doInternalRecovery(XaLogicalLog.java:777)

at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:207)

at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:162)

at org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:64)

at org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:232)

at org.neo4j.index.lucene.LuceneIndexProvider.load(LuceneIndexProvider.java:72)

at org.neo4j.kernel.InternalAbstractGraphDatabase$DefaultKernelExtensionLoader.loadIndexImplementations(InternalAbstractGraphDatabase.java:1181)

at org.neo4j.kernel.InternalAbstractGraphDatabase$DefaultKernelExtensionLoader.init(InternalAbstractGraphDatabase.java:1153)

at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:382)

... 10 more

Caused by: java.io.IOException: read past EOF

at org.apache.lucene.store.BufferedIndexInput.refill(BufferedIndexInput.java:223)

at org.apache.lucene.store.BufferedIndexInput.readByte(BufferedIndexInput.java:39)

at org.apache.lucene.store.ChecksumIndexInput.readByte(ChecksumIndexInput.java:41)

at org.apache.lucene.store.DataInput.readInt(DataInput.java:84)

at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:272)

at org.apache.lucene.index.IndexFileDeleter.<init>(IndexFileDeleter.java:182)

at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:1178)

at org.neo4j.index.impl.lucene.LuceneDataSource.newIndexWriter(LuceneDataSource.java:674)

... 28 more

Mar 18, 2013 3:45:16 PM org.neo4j.server.logging.Logger log

SEVERE: Failed to start Neo Server on port [7474]